+ } else if (temp._valueList != null)
+ return false;
+ return true;
+ }
+ return false;
+ }
+
+ /**
+ * Returns the value of field 'after'. The field 'after' has the following
+ * description: true means the annotation element appears between the
+ * specified position and the next
+ *
+ * @return the value of field 'After'.
+ */
+ public boolean getAfter() {
+ return this._after;
+ }
+
+ /**
+ * Returns the value of field 'description'. The field 'description' has the
+ * following description: Free text at this position
+ *
+ * @return the value of field 'Description'.
+ */
+ public java.lang.String getDescription() {
+ return this._description;
+ }
+
+ /**
+ * Method getGlyph.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the uk.ac.vamsas.objects.core.Glyph at the given index
+ */
+ public uk.ac.vamsas.objects.core.Glyph getGlyph(final int index)
+ throws java.lang.IndexOutOfBoundsException {
+ // check bounds for index
+ if (index < 0 || index >= this._glyphList.size()) {
+ throw new IndexOutOfBoundsException("getGlyph: Index value '" + index
+ + "' not in range [0.." + (this._glyphList.size() - 1) + "]");
+ }
+
+ return (uk.ac.vamsas.objects.core.Glyph) _glyphList.get(index);
+ }
+
+ /**
+ * Method getGlyph.Returns the contents of the collection in an Array.
+ * <p>
+ * Note: Just in case the collection contents are changing in another thread,
+ * we pass a 0-length Array of the correct type into the API call. This way we
+ * <i>know</i> that the Array returned is of exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public uk.ac.vamsas.objects.core.Glyph[] getGlyph() {
+ uk.ac.vamsas.objects.core.Glyph[] array = new uk.ac.vamsas.objects.core.Glyph[0];
+ return (uk.ac.vamsas.objects.core.Glyph[]) this._glyphList.toArray(array);
+ }
+
+ /**
+ * Method getGlyphAsReference.Returns a reference to '_glyphList'. No type
+ * checking is performed on any modifications to the Vector.
+ *
+ * @return a reference to the Vector backing this class
+ */
+ public java.util.Vector getGlyphAsReference() {
+ return this._glyphList;
+ }
+
+ /**
+ * Method getGlyphCount.
+ *
+ * @return the size of this collection
+ */
+ public int getGlyphCount() {
+ return this._glyphList.size();
+ }
+
+ /**
+ * Returns the value of field 'id'. The field 'id' has the following
+ * description: Primary Key for vamsas object referencing
+ *
+ * @return the value of field 'Id'.
+ */
+ public java.lang.String getId() {
+ return this._id;
+ }
+
+ /**
+ * Returns the value of field 'position'. The field 'position' has the
+ * following description: position with respect to the coordinate frame
+ * defined by a rangeType specification
+ *
+ * @return the value of field 'Position'.
+ */
+ public long getPosition() {
+ return this._position;
+ }
+
+ /**
+ * Method getValue.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ * @return the value of the float at the given index
+ */
+ public float getValue(final int index)
+ throws java.lang.IndexOutOfBoundsException {
+ // check bounds for index
+ if (index < 0 || index >= this._valueList.size()) {
+ throw new IndexOutOfBoundsException("getValue: Index value '" + index
+ + "' not in range [0.." + (this._valueList.size() - 1) + "]");
+ }
+
+ return ((java.lang.Float) _valueList.get(index)).floatValue();
+ }
+
+ /**
+ * Method getValue.Returns the contents of the collection in an Array.
+ *
+ * @return this collection as an Array
+ */
+ public float[] getValue() {
+ int size = this._valueList.size();
+ float[] array = new float[size];
+ java.util.Iterator iter = _valueList.iterator();
+ for (int index = 0; index < size; index++) {
+ array[index] = ((java.lang.Float) iter.next()).floatValue();
+ }
+ return array;
+ }
+
+ /**
+ * Method getValueAsReference.Returns a reference to '_valueList'. No type
+ * checking is performed on any modifications to the Vector.
+ *
+ * @return a reference to the Vector backing this class
+ */
+ public java.util.Vector getValueAsReference() {
+ return this._valueList;
+ }
+
+ /**
+ * Method getValueCount.
+ *
+ * @return the size of this collection
+ */
+ public int getValueCount() {
+ return this._valueList.size();
+ }
+
+ /**
+ * Method hasAfter.
+ *
+ * @return true if at least one After has been added
+ */
+ public boolean hasAfter() {
+ return this._has_after;
+ }
+
+ /**
+ * Method hasPosition.
+ *
+ * @return true if at least one Position has been added
+ */
+ public boolean hasPosition() {
+ return this._has_position;
+ }
+
+ /**
+ * Overrides the java.lang.Object.hashCode method.
+ * <p>
+ * The following steps came from <b>Effective Java Programming Language
+ * Guide</b> by Joshua Bloch, Chapter 3
+ *
+ * @return a hash code value for the object.
+ */
+ public int hashCode() {
+ int result = super.hashCode();
+
+ long tmp;
+ result = 37 * result + (int) (_position ^ (_position >>> 32));
+ result = 37 * result + (_after ? 0 : 1);
+ if (_id != null && !org.castor.util.CycleBreaker.startingToCycle(_id)) {
+ result = 37 * result + _id.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_id);
+ }
+ if (_description != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_description)) {
+ result = 37 * result + _description.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_description);
+ }
+ if (_glyphList != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_glyphList)) {
+ result = 37 * result + _glyphList.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_glyphList);
+ }
+ if (_valueList != null
+ && !org.castor.util.CycleBreaker.startingToCycle(_valueList)) {
+ result = 37 * result + _valueList.hashCode();
+ org.castor.util.CycleBreaker.releaseCycleHandle(_valueList);
+ }
+
+ return result;
+ }
+
+ /**
+ * Returns the value of field 'after'. The field 'after' has the following
+ * description: true means the annotation element appears between the
+ * specified position and the next
+ *
+ * @return the value of field 'After'.
+ */
+ public boolean isAfter() {
+ return this._after;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid() {
+ try {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ */
+ public void removeAllGlyph() {
+ this._glyphList.clear();
+ }
+
+ /**
+ */
+ public void removeAllValue() {
+ this._valueList.clear();
+ }
+
+ /**
+ * Method removeGlyph.
+ *
+ * @param vGlyph
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeGlyph(final uk.ac.vamsas.objects.core.Glyph vGlyph) {
+ boolean removed = _glyphList.remove(vGlyph);
+ return removed;
+ }
+
+ /**
+ * Method removeGlyphAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public uk.ac.vamsas.objects.core.Glyph removeGlyphAt(final int index) {
+ java.lang.Object obj = this._glyphList.remove(index);
+ return (uk.ac.vamsas.objects.core.Glyph) obj;
+ }
+
+ /**
+ * Method removeValue.
+ *
+ * @param vValue
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeValue(final float vValue) {
+ boolean removed = _valueList.remove(new java.lang.Float(vValue));
+ return removed;
+ }
+
+ /**
+ * Method removeValueAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public float removeValueAt(final int index) {
+ java.lang.Object obj = this._valueList.remove(index);
+ return ((java.lang.Float) obj).floatValue();
+ }
+
+ /**
+ * Sets the value of field 'after'. The field 'after' has the following
+ * description: true means the annotation element appears between the
+ * specified position and the next
+ *
+ * @param after
+ * the value of field 'after'.
+ */
+ public void setAfter(final boolean after) {
+ this._after = after;
+ this._has_after = true;
+ }
+
+ /**
+ * Sets the value of field 'description'. The field 'description' has the
+ * following description: Free text at this position
+ *
+ * @param description
+ * the value of field 'description'.
+ */
+ public void setDescription(final java.lang.String description) {
+ this._description = description;
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vGlyph
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setGlyph(final int index,
+ final uk.ac.vamsas.objects.core.Glyph vGlyph)
+ throws java.lang.IndexOutOfBoundsException {
+ // check bounds for index
+ if (index < 0 || index >= this._glyphList.size()) {
+ throw new IndexOutOfBoundsException("setGlyph: Index value '" + index
+ + "' not in range [0.." + (this._glyphList.size() - 1) + "]");
+ }
+
+ this._glyphList.set(index, vGlyph);
+ }
+
+ /**
+ *
+ *
+ * @param vGlyphArray
+ */
+ public void setGlyph(final uk.ac.vamsas.objects.core.Glyph[] vGlyphArray) {
+ // -- copy array
+ _glyphList.clear();
+
+ for (int i = 0; i < vGlyphArray.length; i++) {
+ this._glyphList.add(vGlyphArray[i]);
+ }
+ }
+
+ /**
+ * Sets the value of '_glyphList' by copying the given Vector. All elements
+ * will be checked for type safety.
+ *
+ * @param vGlyphList
+ * the Vector to copy.
+ */
+ public void setGlyph(final java.util.Vector vGlyphList) {
+ // copy vector
+ this._glyphList.clear();
+
+ this._glyphList.addAll(vGlyphList);
+ }
+
+ /**
+ * Sets the value of '_glyphList' by setting it to the given Vector. No type
+ * checking is performed.
+ *
+ * @deprecated
+ *
+ * @param glyphVector
+ * the Vector to set.
+ */
+ public void setGlyphAsReference(final java.util.Vector glyphVector) {
+ this._glyphList = glyphVector;
+ }
+
+ /**
+ * Sets the value of field 'id'. The field 'id' has the following description:
+ * Primary Key for vamsas object referencing
+ *
+ * @param id
+ * the value of field 'id'.
+ */
+ public void setId(final java.lang.String id) {
+ this._id = id;
+ }
+
+ /**
+ * Sets the value of field 'position'. The field 'position' has the following
+ * description: position with respect to the coordinate frame defined by a
+ * rangeType specification
+ *
+ * @param position
+ * the value of field 'position'.
+ */
+ public void setPosition(final long position) {
+ this._position = position;
+ this._has_position = true;
+ }
+
+ /**
+ *
+ *
+ * @param index
+ * @param vValue
+ * @throws java.lang.IndexOutOfBoundsException
+ * if the index given is outside the bounds of the collection
+ */
+ public void setValue(final int index, final float vValue)
+ throws java.lang.IndexOutOfBoundsException {
+ // check bounds for index
+ if (index < 0 || index >= this._valueList.size()) {
+ throw new IndexOutOfBoundsException("setValue: Index value '" + index
+ + "' not in range [0.." + (this._valueList.size() - 1) + "]");
+ }
+
+ this._valueList.set(index, new java.lang.Float(vValue));
+ }
+
+ /**
+ *
+ *
+ * @param vValueArray
+ */
+ public void setValue(final float[] vValueArray) {
+ // -- copy array
+ _valueList.clear();
+
+ for (int i = 0; i < vValueArray.length; i++) {
+ this._valueList.add(new java.lang.Float(vValueArray[i]));
+ }
+ }
+
+ /**
+ * Sets the value of '_valueList' by copying the given Vector. All elements
+ * will be checked for type safety.
+ *
+ * @param vValueList
+ * the Vector to copy.
+ */
+ public void setValue(final java.util.Vector vValueList) {
+ // copy vector
+ this._valueList.clear();
+
+ this._valueList.addAll(vValueList);
+ }
+
+ /**
+ * Sets the value of '_valueList' by setting it to the given Vector. No type
+ * checking is performed.
+ *
+ * @deprecated
+ *
+ * @param valueVector
+ * the Vector to set.
+ */
+ public void setValueAsReference(final java.util.Vector valueVector) {
+ this._valueList = valueVector;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled uk.ac.vamsas.objects.core.AnnotationElement
+ */
+ public static uk.ac.vamsas.objects.core.AnnotationElement unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException {
+ return (uk.ac.vamsas.objects.core.AnnotationElement) Unmarshaller
+ .unmarshal(uk.ac.vamsas.objects.core.AnnotationElement.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }