git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
Merge branch 'Jalview-JS/develop' into merge_js_develop
[jalview.git]
/
test
/
jalview
/
analysis
/
CrossRefTest.java
diff --git
a/test/jalview/analysis/CrossRefTest.java
b/test/jalview/analysis/CrossRefTest.java
index
e5818a2
..
9a0d610
100644
(file)
--- a/
test/jalview/analysis/CrossRefTest.java
+++ b/
test/jalview/analysis/CrossRefTest.java
@@
-28,6
+28,14
@@
import static org.testng.AssertJUnit.assertNull;
import static org.testng.AssertJUnit.assertSame;
import static org.testng.AssertJUnit.assertTrue;
import static org.testng.AssertJUnit.assertSame;
import static org.testng.AssertJUnit.assertTrue;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
+
+import org.testng.annotations.AfterClass;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
import jalview.datamodel.AlignedCodonFrame;
import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignedCodonFrame;
import jalview.datamodel.AlignedCodonFrame.SequenceToSequenceMapping;
import jalview.datamodel.Alignment;
@@
-41,15
+49,6
@@
import jalview.gui.JvOptionPane;
import jalview.util.DBRefUtils;
import jalview.util.MapList;
import jalview.ws.SequenceFetcher;
import jalview.util.DBRefUtils;
import jalview.util.MapList;
import jalview.ws.SequenceFetcher;
-import jalview.ws.SequenceFetcherFactory;
-
-import java.util.ArrayList;
-import java.util.Arrays;
-import java.util.List;
-
-import org.testng.annotations.AfterClass;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.Test;
public class CrossRefTest
{
public class CrossRefTest
{
@@
-442,7
+441,7
@@
public class CrossRefTest
return new SequenceI[] { pep1, pep2 };
}
};
return new SequenceI[] { pep1, pep2 };
}
};
- SequenceFetcherFactory.setSequenceFetcher(mockFetcher);
+ SequenceFetcher.setMockFetcher(mockFetcher);
/*
* find UNIPROT xrefs for nucleotide sequence
/*
* find UNIPROT xrefs for nucleotide sequence
@@
-458,7
+457,7
@@
public class CrossRefTest
@AfterClass(alwaysRun = true)
public void tearDown()
{
@AfterClass(alwaysRun = true)
public void tearDown()
{
- SequenceFetcherFactory.setSequenceFetcher(null);
+ SequenceFetcher.setMockFetcher(null);
}
/**
}
/**
@@
-520,7
+519,7
@@
public class CrossRefTest
return new SequenceI[] { pep1, pep2 };
}
};
return new SequenceI[] { pep1, pep2 };
}
};
- SequenceFetcherFactory.setSequenceFetcher(mockFetcher);
+ SequenceFetcher.setMockFetcher(mockFetcher);
/*
* find UNIPROT xrefs for gene and transcripts
/*
* find UNIPROT xrefs for gene and transcripts
@@
-680,7
+679,7
@@
public class CrossRefTest
}
}
};
}
}
};
- SequenceFetcherFactory.setSequenceFetcher(mockFetcher);
+ SequenceFetcher.setMockFetcher(mockFetcher);
/*
* find EMBL xrefs for Uniprot seqs and verify that
/*
* find EMBL xrefs for Uniprot seqs and verify that