// NMD_transcript_variant treated like transcript in Ensembl
SequenceFeature sf3 = new SequenceFeature("NMD_transcript_variant", "",
22000, 22500, 0f, null);
// NMD_transcript_variant treated like transcript in Ensembl
SequenceFeature sf3 = new SequenceFeature("NMD_transcript_variant", "",
22000, 22500, 0f, null);
sf3.setValue("transcript_id", "transcript3");
genomic.addSequenceFeature(sf3);
sf3.setValue("transcript_id", "transcript3");
genomic.addSequenceFeature(sf3);
sf.setValue("ID", "gene:" + accId);
assertTrue(testee.identifiesSequence(sf, accId));
sf.setValue("ID", "gene:" + accId);
assertTrue(testee.identifiesSequence(sf, accId));
// transcript not valid:
sf = new SequenceFeature("transcript", "", 1, 2, 0f, null);
sf.setValue("ID", "gene:" + accId);
// transcript not valid:
sf = new SequenceFeature("transcript", "", 1, 2, 0f, null);
sf.setValue("ID", "gene:" + accId);