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Merge branch 'feature/JAL-3690_callback-based-web-services' into alpha/JAL-3066_Jalvi...
[jalview.git]
/
test
/
jalview
/
gui
/
AlignFrameTest.java
diff --git
a/test/jalview/gui/AlignFrameTest.java
b/test/jalview/gui/AlignFrameTest.java
index
1a4920d
..
31bd214
100644
(file)
--- a/
test/jalview/gui/AlignFrameTest.java
+++ b/
test/jalview/gui/AlignFrameTest.java
@@
-27,6
+27,14
@@
import static org.testng.Assert.assertNotSame;
import static org.testng.Assert.assertSame;
import static org.testng.Assert.assertTrue;
import static org.testng.Assert.assertSame;
import static org.testng.Assert.assertTrue;
+import java.awt.Color;
+import java.util.Iterator;
+
+import org.testng.annotations.AfterMethod;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.BeforeMethod;
+import org.testng.annotations.Test;
+
import jalview.api.AlignViewportI;
import jalview.api.FeatureColourI;
import jalview.bin.Cache;
import jalview.api.AlignViewportI;
import jalview.api.FeatureColourI;
import jalview.bin.Cache;
@@
-51,14
+59,6
@@
import jalview.schemes.TurnColourScheme;
import jalview.util.MessageManager;
import jalview.viewmodel.AlignmentViewport;
import jalview.util.MessageManager;
import jalview.viewmodel.AlignmentViewport;
-import java.awt.Color;
-import java.util.Iterator;
-
-import org.testng.annotations.AfterMethod;
-import org.testng.annotations.BeforeClass;
-import org.testng.annotations.BeforeMethod;
-import org.testng.annotations.Test;
-
public class AlignFrameTest
{
AlignFrame af;
public class AlignFrameTest
{
AlignFrame af;
@@
-77,7
+77,7
@@
public class AlignFrameTest
@AfterMethod(alwaysRun = true)
public void tearDown()
{
@AfterMethod(alwaysRun = true)
public void tearDown()
{
- Desktop.instance.closeAll_actionPerformed(null);
+ Desktop.getInstance().closeAll_actionPerformed(null);
}
/**
}
/**
@@
-88,7
+88,7
@@
public class AlignFrameTest
public void setUp()
{
Cache.loadProperties("test/jalview/io/testProps.jvprops");
public void setUp()
{
Cache.loadProperties("test/jalview/io/testProps.jvprops");
- Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+ Cache.setPropertyNoSave("SHOW_IDENTITY",
Boolean.TRUE.toString());
af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
DataSourceType.FILE);
Boolean.TRUE.toString());
af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
DataSourceType.FILE);
@@
-96,18
+96,15
@@
public class AlignFrameTest
/*
* wait for Consensus thread to complete
*/
/*
* wait for Consensus thread to complete
*/
- synchronized (this)
+ do
{
{
- while (af.getViewport().getConsensusSeq() == null)
+ try
+ {
+ Thread.sleep(50);
+ } catch (InterruptedException x)
{
{
- try
- {
- wait(50);
- } catch (InterruptedException e)
- {
- }
}
}
- }
+ } while (af.getViewport().getCalcManager().isWorking());
}
public static void setUpJvOptionPane()
}
public static void setUpJvOptionPane()
@@
-360,7
+357,7
@@
public class AlignFrameTest
/*
* inspect the colour of
/*
* inspect the colour of
- * FER_CAPAN.9(I), column 14 (14 base 0)
+ * FER_CAPAN.9(I), column 15 (14 base 0)
* FER_CAPAN.10(SER), column 16 (15 base 0)
*/
SequenceI ferCapan = al.findName("FER_CAPAN");
* FER_CAPAN.10(SER), column 16 (15 base 0)
*/
SequenceI ferCapan = al.findName("FER_CAPAN");
@@
-379,10
+376,14
@@
public class AlignFrameTest
SliderPanel sp = SliderPanel.getSliderPanel();
assertTrue(sp.isForConservation());
assertEquals(sp.getValue(), 30); // initial slider setting
SliderPanel sp = SliderPanel.getSliderPanel();
assertTrue(sp.isForConservation());
assertEquals(sp.getValue(), 30); // initial slider setting
+ c = rs.findColour('I', 14, ferCapan);
+ Color i_faded = new Color(255, 255, 255);
+ assertEquals(c, i_faded);
sp.valueChanged(10);
assertSame(rs, av.getResidueShading());
sp.valueChanged(10);
assertSame(rs, av.getResidueShading());
+ assertEquals(rs.getConservationInc(), 10);
c = rs.findColour('I', 14, ferCapan);
c = rs.findColour('I', 14, ferCapan);
- Color i_faded = new Color(196, 186, 196);
+ i_faded = new Color(196, 186, 196);
assertEquals(c, i_faded);
c = rs.findColour('S', 15, ferCapan);
Color s_faded = new Color(144, 225, 144);
assertEquals(c, i_faded);
c = rs.findColour('S', 15, ferCapan);
Color s_faded = new Color(144, 225, 144);