+ // 2.11.2 - beforeMethod setup
+ // Cache.loadProperties("test/jalview/io/testProps.jvprops");
+ //Cache.applicationProperties.setProperty("SHOW_IDENTITY",
+ // Boolean.TRUE.toString());
+ // af = new FileLoader().LoadFileWaitTillLoaded("examples/uniref50.fa",
+ // DataSourceType.FILE);
+ // /*
+ // * wait for Consensus thread to complete
+ // */
+ // do
+ // {
+ //try
+ //{
+ // Thread.sleep(50);
+ //} catch (InterruptedException x)
+ //{
+ //}
+ // } while (af.getViewport().getCalcManager().isWorking());
+