- SequenceI seq = new Sequence("name", "MATVLGSPRAPAFF"); // FER1_MAIZE...
- AlignmentI al = new Alignment(new SequenceI[] { seq });
- final AlignViewport av = new AlignViewport(al);
- SequenceRenderer sr = new SequenceRenderer(av);
- av.setGlobalColourScheme(new ZappoColourScheme());
-
- // @see ResidueProperties.zappo
- assertEquals(Color.pink, sr.getResidueBoxColour(seq, 0)); // M
- assertEquals(Color.green, sr.getResidueBoxColour(seq, 2)); // T
- assertEquals(Color.magenta, sr.getResidueBoxColour(seq, 5)); // G
- assertEquals(Color.orange, sr.getResidueBoxColour(seq, 12)); // F
+ seq1 = new Sequence("Seq1", "ABCEEEABCABC");
+ SequenceI seq2 = new Sequence("Seq2", "ABCABCABCABC");
+ SequenceI seq3 = new Sequence("Seq3", "ABCABCABCABC");
+ SequenceI[] seqs = new SequenceI[] { seq1, seq2, seq3 };
+ al = new Alignment(seqs);
+ al.setDataset(null);
+ av = new AlignViewport(al);