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Merge branch 'develop' into improvement/JAL-3594_BG_and_UoD_logos_added
[jalview.git]
/
test
/
jalview
/
io
/
GenBankFileTest.java
diff --git
a/test/jalview/io/GenBankFileTest.java
b/test/jalview/io/GenBankFileTest.java
index
97e4754
..
83d630f
100644
(file)
--- a/
test/jalview/io/GenBankFileTest.java
+++ b/
test/jalview/io/GenBankFileTest.java
@@
-13,7
+13,7
@@
import java.util.Set;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
-import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.Mapping;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.Mapping;
import jalview.datamodel.SequenceFeature;
@@
-26,7
+26,7
@@
public class GenBankFileTest
@BeforeClass(alwaysRun = true)
public void setUp()
{
@BeforeClass(alwaysRun = true)
public void setUp()
{
- Cache.initLogger();
+ Console.initLogger();
}
/**
}
/**
@@
-193,7
+193,7
@@
public class GenBankFileTest
assertTrue(seqString.endsWith("FKQKS"));
map = mapping.getMap();
assertEquals(map.getFromLowest(), 6045);
assertTrue(seqString.endsWith("FKQKS"));
map = mapping.getMap();
assertEquals(map.getFromLowest(), 6045);
- assertEquals(map.getFromHighest(), 6788);
+ assertEquals(map.getFromHighest(), 6785); // excludes stop at 6788
assertEquals(map.getToLowest(), 1);
assertEquals(map.getToHighest(), 247);
assertEquals(map.getFromRatio(), 3);
assertEquals(map.getToLowest(), 1);
assertEquals(map.getToHighest(), 247);
assertEquals(map.getFromRatio(), 3);