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JAL-3529 test for AC <Uniprot/EMBL> rather than DR in Stockholm file
[jalview.git]
/
test
/
jalview
/
io
/
StockholmFileTest.java
diff --git
a/test/jalview/io/StockholmFileTest.java
b/test/jalview/io/StockholmFileTest.java
index
a16aa07
..
85ccdcb
100644
(file)
--- a/
test/jalview/io/StockholmFileTest.java
+++ b/
test/jalview/io/StockholmFileTest.java
@@
-114,7
+114,12
@@
public class StockholmFileTest
String toStockholm = af.formatSequences(FileFormat.Stockholm,
new Alignment(new SequenceI[]
{ sq }), false);
String toStockholm = af.formatSequences(FileFormat.Stockholm,
new Alignment(new SequenceI[]
{ sq }), false);
- assertTrue(toStockholm.matches("AC\\s+P00224"),
+ System.out.println(toStockholm);
+ // bleh - java.util.Regex sucks
+ assertTrue(
+ Pattern.compile(".*\\s+AC\\s+P00224.*",
+ java.util.regex.Pattern.DOTALL).matcher(toStockholm)
+ .matches(),
"Couldn't locate UNIPROT Accession in generated Stockholm file.");
AlignmentI fromStockholm = af.readFile(toStockholm,
DataSourceType.PASTE, FileFormat.Stockholm);
"Couldn't locate UNIPROT Accession in generated Stockholm file.");
AlignmentI fromStockholm = af.readFile(toStockholm,
DataSourceType.PASTE, FileFormat.Stockholm);