JAL-3444 transparent colour for alignment in JS

[jalview.git] / _j2sclasslist.txt

diff --git a/_j2sclasslist.txt b/_j2sclasslist.txt
index 55cb592..fde0115 100644 (file)
--- a/_j2sclasslist.txt
+++ b/_j2sclasslist.txt
@@ -90,6 +90,9 @@ jalview/datamodel/features/FeatureMatcherI.js
 jalview/datamodel/features/FeatureMatcherSet.js
 jalview/datamodel/features/FeatureMatcherSetI.js
 jalview/datamodel/features/FeatureStore.js
+jalview/datamodel/features/FeatureStoreI.js
+jalview/datamodel/features/FeatureStoreJS.js
+
 jalview/datamodel/features/SequenceFeatures.js
 jalview/datamodel/features/SequenceFeaturesI.js
 jalview/gui/AlignFrame.js
@@ -669,10 +672,12 @@ javax/xml/bind/annotation/adapters/CollapsedStringAdapter.js
 javax/xml/bind/annotation/adapters/XmlAdapter.js
 javax/xml/bind/helpers/AbstractUnmarshallerImpl.js
 javax/xml/bind/helpers/DefaultValidationEventHandler.js
+javax/xml/datatype/DatatypeFactory.js
 javax/xml/datatype/XMLGregorianCalendar.js
 javax/xml/namespace/QName.js
 javax/xml/stream/XMLInputFactory.js
 javax/xml/stream/XMLStreamReader.js
+org/apache/xerces/jaxp/datatype/DatatypeFactoryImpl.js
 org/apache/xerces/jaxp/datatype/XMLGregorianCalendarImpl.js
 org/json/simple/parser/JSONParser.js
 org/json/simple/parser/ParseException.js
@@ -807,17 +812,13 @@ swingjs/xml/JSJAXBField.js
 swingjs/xml/JSJAXBUnmarshaller.js
 swingjs/xml/JSSAXAttributes.js
 swingjs/xml/JSSAXParser.js
+swingjs/xml/JSXMLDatatypeFactoryImpl.js
 swingjs/xml/JSXMLGregorianCalendarImpl.js
 swingjs/xml/JSXMLInputFactory.js
 swingjs/xml/JSXMLStreamReader.js
 intervalstore/api/IntervalI.js
 intervalstore/api/IntervalStoreI.js
-intervalstore/impl/BinarySearcher.js
-intervalstore/impl/IntervalStore.js
-intervalstore/impl/NCList.js
-intervalstore/impl/NCListBuilder.js
-intervalstore/impl/NCNode.js
-intervalstore/impl/Range.js
+intervalstore/nonc/IntervalStore.js
 jalview/analysis/GeneticCodeI.js
 jalview/analysis/GeneticCodes.js
 jalview/api/FeaturesSourceI.js