import org.gradle.plugins.ide.eclipse.model.Output
import org.gradle.plugins.ide.eclipse.model.Library
import java.security.MessageDigest
+import java.util.regex.Matcher
import groovy.transform.ExternalizeMethods
import groovy.util.XmlParser
import groovy.xml.XmlUtil
dependencies {
classpath "com.vladsch.flexmark:flexmark-all:0.62.0"
classpath "org.jsoup:jsoup:1.14.3"
+ classpath "com.eowise:gradle-imagemagick:0.5.1"
}
}
id "com.diffplug.gradle.spotless" version "3.28.0"
id 'com.github.johnrengelman.shadow' version '4.0.3'
id 'com.install4j.gradle' version '9.0.6'
- id 'com.dorongold.task-tree' version '1.5' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
+ id 'com.dorongold.task-tree' version '2.1.0' // only needed to display task dependency tree with gradle task1 [task2 ...] taskTree
id 'com.palantir.git-version' version '0.13.0' apply false
}
getdownChannelName = CHANNEL.toLowerCase()
// default to "default". Currently only has different cosmetics for "develop", "release", "default"
propertiesChannelName = ["develop", "release", "test-release", "jalviewjs", "jalviewjs-release" ].contains(getdownChannelName) ? getdownChannelName : "default"
+ channelDirName = propertiesChannelName
// Import channel_properties
- channelDir = string("${jalviewDir}/${channel_properties_dir}/${propertiesChannelName}")
+ if (getdownChannelName.startsWith("develop-")) {
+ channelDirName = "develop-SUFFIX"
+ }
+ channelDir = string("${jalviewDir}/${channel_properties_dir}/${channelDirName}")
channelGradleProperties = string("${channelDir}/channel_gradle.properties")
channelPropsFile = string("${channelDir}/${resource_dir}/${channel_props}")
overrideProperties(channelGradleProperties, false)
if (findProperty("JALVIEW_VERSION")==null || "".equals(JALVIEW_VERSION)) {
JALVIEW_VERSION = releaseProps.get("jalview.version")
}
+ println("JALVIEW_VERSION is set to '${JALVIEW_VERSION}'")
// this property set when running Eclipse headlessly
j2sHeadlessBuildProperty = string("net.sf.j2s.core.headlessbuild")
testSourceDir = useClover ? cloverTestInstrDir : testDir
testClassesDir = useClover ? cloverTestClassesDir : "${jalviewDir}/${test_output_dir}"
+ channelSuffix = ""
+ backgroundImageText = false
getdownChannelDir = string("${getdown_website_dir}/${propertiesChannelName}")
getdownAppBaseDir = string("${jalviewDir}/${getdownChannelDir}/${JAVA_VERSION}")
getdownArchiveDir = string("${jalviewDir}/${getdown_archive_dir}")
getdownLauncher = string("${jalviewDir}/${getdown_lib_dir}/${getdown_launcher}")
getdownAppDistDir = getdown_app_dir_alt
getdownImagesDir = string("${jalviewDir}/${getdown_images_dir}")
+ getdownImagesBuildDir = string("${buildDir}/imagemagick/getdown")
getdownSetAppBaseProperty = false // whether to pass the appbase and appdistdir to the application
reportRsyncCommand = false
jvlChannelName = CHANNEL.toLowerCase()
install4jSuffix = CHANNEL.substring(0, 1).toUpperCase() + CHANNEL.substring(1).toLowerCase(); // BUILD -> Build
install4jDMGDSStore = "${install4j_images_dir}/${install4j_dmg_ds_store}"
- install4jDMGBackgroundImage = "${install4j_images_dir}/${install4j_dmg_background}"
+ install4jDMGBackgroundImageDir = "${install4j_images_dir}"
+ install4jDMGBackgroundImageBuildDir = "build/imagemagick/install4j"
+ install4jDMGBackgroundImageFile = "${install4j_dmg_background}"
install4jInstallerName = "${jalview_name} Non-Release Installer"
install4jExecutableName = install4j_executable_name
install4jExtraScheme = "jalviewx"
install4jExtraScheme = "jalviewa"
break
+ case ~/^DEVELOP-([\.\-\w]*)$/:
+ def suffix = Matcher.lastMatcher[0][1]
+ reportRsyncCommand = true
+ getdownSetAppBaseProperty = true
+ JALVIEW_VERSION=JALVIEW_VERSION+"-d${suffix}-${buildDate}"
+ install4jSuffix = "Develop ${suffix}"
+ install4jExtraScheme = "jalviewd"
+ install4jInstallerName = "${jalview_name} Develop ${suffix} Installer"
+ getdownChannelName = string("develop-${suffix}")
+ getdownChannelDir = string("${getdown_website_dir}/${getdownChannelName}")
+ getdownAppBaseDir = string("${jalviewDir}/${getdownChannelDir}/${JAVA_VERSION}")
+ getdownDir = string("${getdownChannelName}/${JAVA_VERSION}")
+ getdownAppBase = string("${getdown_channel_base}/${getdownDir}")
+ channelSuffix = string(suffix)
+ backgroundImageText = true
+ break
+
case "DEVELOP":
reportRsyncCommand = true
getdownSetAppBaseProperty = true
helpSourceDir = string("${helpParentDir}/${help_dir}")
helpFile = string("${helpBuildDir}/${help_dir}/help.jhm")
+ convertBinary = null
+ convertBinaryExpectedLocation = imagemagick_convert
+ if (convertBinaryExpectedLocation.startsWith("~/")) {
+ convertBinaryExpectedLocation = System.getProperty("user.home") + convertBinaryExpectedLocation.substring(1)
+ }
+ if (file(convertBinaryExpectedLocation).exists()) {
+ convertBinary = convertBinaryExpectedLocation
+ }
relativeBuildDir = file(jalviewDirAbsolutePath).toPath().relativize(buildDir.toPath())
jalviewjsBuildDir = string("${relativeBuildDir}/jalviewjs")
}
+def hugoTemplateSubstitutions(String input, Map extras=null) {
+ def replacements = [
+ DATE: getDate("yyyy-MM-dd"),
+ CHANNEL: propertiesChannelName,
+ APPLICATION_NAME: applicationName,
+ GIT_HASH: gitHash,
+ GIT_BRANCH: gitBranch,
+ VERSION: JALVIEW_VERSION,
+ JAVA_VERSION: JAVA_VERSION,
+ VERSION_UNDERSCORES: JALVIEW_VERSION_UNDERSCORES,
+ DRAFT: "false",
+ JVL_HEADER: ""
+ ]
+ def output = input
+ if (extras != null) {
+ extras.each{ k, v ->
+ output = output.replaceAll("__${k}__", ((v == null)?"":v))
+ }
+ }
+ replacements.each{ k, v ->
+ output = output.replaceAll("__${k}__", ((v == null)?"":v))
+ }
+ return output
+}
+
+def mdFileComponents(File mdFile, def dateOnly=false) {
+ def map = [:]
+ def content = ""
+ if (mdFile.exists()) {
+ def inFrontMatter = false
+ def firstLine = true
+ mdFile.eachLine { line ->
+ if (line.matches("---")) {
+ def prev = inFrontMatter
+ inFrontMatter = firstLine
+ if (inFrontMatter != prev)
+ return false
+ }
+ if (inFrontMatter) {
+ def m = null
+ if (m = line =~ /^date:\s*(\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2})/) {
+ map["date"] = new Date().parse("yyyy-MM-dd HH:mm:ss", m[0][1])
+ } else if (m = line =~ /^date:\s*(\d{4}-\d{2}-\d{2})/) {
+ map["date"] = new Date().parse("yyyy-MM-dd", m[0][1])
+ } else if (m = line =~ /^channel:\s*(\S+)/) {
+ map["channel"] = m[0][1]
+ } else if (m = line =~ /^version:\s*(\S+)/) {
+ map["version"] = m[0][1]
+ } else if (m = line =~ /^\s*([^:]+)\s*:\s*(\S.*)/) {
+ map[ m[0][1] ] = m[0][2]
+ }
+ if (dateOnly && map["date"] != null) {
+ return false
+ }
+ } else {
+ if (dateOnly)
+ return false
+ content += line+"\n"
+ }
+ firstLine = false
+ }
+ }
+ return dateOnly ? map["date"] : [map, content]
+}
+
+task hugoTemplates {
+ group "website"
+ description "Create partially populated md pages for hugo website build"
+
+ def hugoTemplatesDir = file("${jalviewDir}/${hugo_templates_dir}")
+ def hugoBuildDir = "${jalviewDir}/${hugo_build_dir}"
+ def templateFiles = fileTree(dir: hugoTemplatesDir)
+ def releaseMdFile = file("${jalviewDir}/${releases_dir}/release-${JALVIEW_VERSION_UNDERSCORES}.md")
+ def whatsnewMdFile = file("${jalviewDir}/${whatsnew_dir}/whatsnew-${JALVIEW_VERSION_UNDERSCORES}.md")
+ def oldJvlFile = file("${jalviewDir}/${hugo_old_jvl}")
+ def jalviewjsFile = file("${jalviewDir}/${hugo_jalviewjs}")
+
+ doFirst {
+ // specific release template for version archive
+ def changes = ""
+ def whatsnew = null
+ def givenDate = null
+ def givenChannel = null
+ def givenVersion = null
+ if (CHANNEL == "RELEASE") {
+ def (map, content) = mdFileComponents(releaseMdFile)
+ givenDate = map.date
+ givenChannel = map.channel
+ givenVersion = map.version
+ changes = content
+ if (givenVersion != null && givenVersion != JALVIEW_VERSION) {
+ throw new GradleException("'version' header (${givenVersion}) found in ${releaseMdFile} does not match JALVIEW_VERSION (${JALVIEW_VERSION})")
+ }
+
+ if (whatsnewMdFile.exists())
+ whatsnew = whatsnewMdFile.text
+ }
+
+ def oldJvl = oldJvlFile.exists() ? oldJvlFile.collect{it} : []
+ def jalviewjsLink = jalviewjsFile.exists() ? jalviewjsFile.collect{it} : []
+
+ def changesHugo = null
+ if (changes != null) {
+ changesHugo = '<div class="release_notes">\n\n'
+ def inSection = false
+ changes.eachLine { line ->
+ def m = null
+ if (m = line =~ /^##([^#].*)$/) {
+ if (inSection) {
+ changesHugo += "</div>\n\n"
+ }
+ def section = m[0][1].trim()
+ section = section.toLowerCase()
+ section = section.replaceAll(/ +/, "_")
+ section = section.replaceAll(/[^a-z0-9_\-]/, "")
+ changesHugo += "<div class=\"${section}\">\n\n"
+ inSection = true
+ } else if (m = line =~ /^(\s*-\s*)<!--([^>]+)-->(.*?)(<br\/?>)?\s*$/) {
+ def comment = m[0][2].trim()
+ if (comment != "") {
+ comment = comment.replaceAll('"', """)
+ def issuekeys = []
+ comment.eachMatch(/JAL-\d+/) { jal -> issuekeys += jal }
+ def newline = m[0][1]
+ if (comment.trim() != "")
+ newline += "{{<comment>}}${comment}{{</comment>}} "
+ newline += m[0][3].trim()
+ if (issuekeys.size() > 0)
+ newline += " {{< jal issue=\"${issuekeys.join(",")}\" alt=\"${comment}\" >}}"
+ if (m[0][4] != null)
+ newline += m[0][4]
+ line = newline
+ }
+ }
+ changesHugo += line+"\n"
+ }
+ if (inSection) {
+ changesHugo += "\n</div>\n\n"
+ }
+ changesHugo += '</div>'
+ }
+
+ templateFiles.each{ templateFile ->
+ def newFileName = string(hugoTemplateSubstitutions(templateFile.getName()))
+ def relPath = hugoTemplatesDir.toPath().relativize(templateFile.toPath()).getParent()
+ def newRelPathName = hugoTemplateSubstitutions( relPath.toString() )
+
+ def outPathName = string("${hugoBuildDir}/$newRelPathName")
+
+ copy {
+ from templateFile
+ rename(templateFile.getName(), newFileName)
+ into outPathName
+ }
+
+ def newFile = file("${outPathName}/${newFileName}".toString())
+ def content = newFile.text
+ newFile.text = hugoTemplateSubstitutions(content,
+ [
+ WHATSNEW: whatsnew,
+ CHANGES: changesHugo,
+ DATE: givenDate == null ? "" : givenDate.format("yyyy-MM-dd"),
+ DRAFT: givenDate == null ? "true" : "false",
+ JALVIEWJSLINK: jalviewjsLink.contains(JALVIEW_VERSION) ? "true" : "false",
+ JVL_HEADER: oldJvl.contains(JALVIEW_VERSION) ? "jvl: true" : ""
+ ]
+ )
+ }
+
+ }
+
+ inputs.file(oldJvlFile)
+ inputs.dir(hugoTemplatesDir)
+ inputs.property("JALVIEW_VERSION", { JALVIEW_VERSION })
+ inputs.property("CHANNEL", { CHANNEL })
+}
+
+def getMdDate(File mdFile) {
+ return mdFileComponents(mdFile, true)
+}
+
+def getMdSections(String content) {
+ def sections = [:]
+ def sectionContent = ""
+ def sectionName = null
+ content.eachLine { line ->
+ def m = null
+ if (m = line =~ /^##([^#].*)$/) {
+ if (sectionName != null) {
+ sections[sectionName] = sectionContent
+ sectionName = null
+ sectionContent = ""
+ }
+ sectionName = m[0][1].trim()
+ sectionName = sectionName.toLowerCase()
+ sectionName = sectionName.replaceAll(/ +/, "_")
+ sectionName = sectionName.replaceAll(/[^a-z0-9_\-]/, "")
+ } else if (sectionName != null) {
+ sectionContent += line+"\n"
+ }
+ }
+ if (sectionContent != null) {
+ sections[sectionName] = sectionContent
+ }
+ return sections
+}
+
+
task copyHelp(type: Copy) {
def inputDir = helpSourceDir
def outputDir = "${helpBuildDir}/${help_dir}"
}
-task copyResources(type: Copy) {
- group = "build"
- description = "Copy (and make text substitutions in) the resources dir to the build area"
+task releasesTemplates {
+ group "help"
+ description "Recreate whatsNew.html and releases.html from markdown files and templates in help"
- def inputDir = resourceDir
- def outputDir = resourcesBuildDir
- from(inputDir) {
- include('**/*.txt')
- include('**/*.md')
- include('**/*.html')
- include('**/*.xml')
- filter(ReplaceTokens,
- beginToken: '$$',
- endToken: '$$',
- tokens: [
- 'Version-Rel': JALVIEW_VERSION,
- 'Year-Rel': getDate("yyyy")
- ]
- )
- }
- from(inputDir) {
- exclude('**/*.txt')
- exclude('**/*.md')
- exclude('**/*.html')
- exclude('**/*.xml')
- }
- into outputDir
+ dependsOn copyHelp
- inputs.dir(inputDir)
- outputs.dir(outputDir)
-}
+ def releasesTemplateFile = file("${jalviewDir}/${releases_template}")
+ def whatsnewTemplateFile = file("${jalviewDir}/${whatsnew_template}")
+ def releasesHtmlFile = file("${helpBuildDir}/${help_dir}/${releases_html}")
+ def whatsnewHtmlFile = file("${helpBuildDir}/${help_dir}/${whatsnew_html}")
+ def releasesMdDir = "${jalviewDir}/${releases_dir}"
+ def whatsnewMdDir = "${jalviewDir}/${whatsnew_dir}"
-task copyChannelResources(type: Copy) {
- dependsOn copyResources
- group = "build"
+ doFirst {
+ def releaseMdFile = file("${releasesMdDir}/release-${JALVIEW_VERSION_UNDERSCORES}.md")
+ def whatsnewMdFile = file("${whatsnewMdDir}/whatsnew-${JALVIEW_VERSION_UNDERSCORES}.md")
+
+ if (CHANNEL == "RELEASE") {
+ if (!releaseMdFile.exists()) {
+ throw new GradleException("File ${releaseMdFile} must be created for RELEASE")
+ }
+ if (!whatsnewMdFile.exists()) {
+ throw new GradleException("File ${whatsnewMdFile} must be created for RELEASE")
+ }
+ }
+
+ def releaseFiles = fileTree(dir: releasesMdDir, include: "release-*.md")
+ def releaseFilesDates = releaseFiles.collectEntries {
+ [(it): getMdDate(it)]
+ }
+ releaseFiles = releaseFiles.sort { a,b -> releaseFilesDates[a].compareTo(releaseFilesDates[b]) }
+
+ def releasesTemplate = releasesTemplateFile.text
+ def m = releasesTemplate =~ /(?s)__VERSION_LOOP_START__(.*)__VERSION_LOOP_END__/
+ def versionTemplate = m[0][1]
+
+ MutableDataSet options = new MutableDataSet()
+
+ def extensions = new ArrayList<>()
+ options.set(Parser.EXTENSIONS, extensions)
+ options.set(Parser.HTML_BLOCK_COMMENT_ONLY_FULL_LINE, true)
+
+ Parser parser = Parser.builder(options).build()
+ HtmlRenderer renderer = HtmlRenderer.builder(options).build()
+
+ def actualVersions = releaseFiles.collect { rf ->
+ def (rfMap, rfContent) = mdFileComponents(rf)
+ return rfMap.version
+ }
+ def versionsHtml = ""
+ def linkedVersions = []
+ releaseFiles.reverse().each { rFile ->
+ def (rMap, rContent) = mdFileComponents(rFile)
+
+ def versionLink = ""
+ def partialVersion = ""
+ def firstPart = true
+ rMap.version.split("\\.").each { part ->
+ def displayPart = ( firstPart ? "" : "." ) + part
+ partialVersion += displayPart
+ if (
+ linkedVersions.contains(partialVersion)
+ || ( actualVersions.contains(partialVersion) && partialVersion != rMap.version )
+ ) {
+ versionLink += displayPart
+ } else {
+ versionLink += "<a id=\"Jalview.${partialVersion}\">${displayPart}</a>"
+ linkedVersions += partialVersion
+ }
+ firstPart = false
+ }
+ def displayDate = releaseFilesDates[rFile].format("dd/MM/yyyy")
+
+ def lm = null
+ def rContentProcessed = ""
+ rContent.eachLine { line ->
+ if (lm = line =~ /^(\s*-)(\s*<!--[^>]*?-->)(.*)$/) {
+ line = "${lm[0][1]}${lm[0][3]}${lm[0][2]}"
+ } else if (lm = line =~ /^###([^#]+.*)$/) {
+ line = "_${lm[0][1].trim()}_"
+ }
+ rContentProcessed += line + "\n"
+ }
+
+ def rContentSections = getMdSections(rContentProcessed)
+ def rVersion = versionTemplate
+ if (rVersion != "") {
+ def rNewFeatures = rContentSections["new_features"]
+ def rIssuesResolved = rContentSections["issues_resolved"]
+ Node newFeaturesNode = parser.parse(rNewFeatures)
+ String newFeaturesHtml = renderer.render(newFeaturesNode)
+ Node issuesResolvedNode = parser.parse(rIssuesResolved)
+ String issuesResolvedHtml = renderer.render(issuesResolvedNode)
+ rVersion = hugoTemplateSubstitutions(rVersion,
+ [
+ VERSION: rMap.version,
+ VERSION_LINK: versionLink,
+ DISPLAY_DATE: displayDate,
+ NEW_FEATURES: newFeaturesHtml,
+ ISSUES_RESOLVED: issuesResolvedHtml
+ ]
+ )
+ versionsHtml += rVersion
+ }
+ }
+
+ releasesTemplate = releasesTemplate.replaceAll("(?s)__VERSION_LOOP_START__.*__VERSION_LOOP_END__", versionsHtml)
+ releasesTemplate = hugoTemplateSubstitutions(releasesTemplate)
+ releasesHtmlFile.text = releasesTemplate
+
+ if (whatsnewMdFile.exists()) {
+ def wnDisplayDate = releaseFilesDates[releaseMdFile] != null ? releaseFilesDates[releaseMdFile].format("dd MMMM yyyy") : ""
+ def whatsnewMd = hugoTemplateSubstitutions(whatsnewMdFile.text)
+ Node whatsnewNode = parser.parse(whatsnewMd)
+ String whatsnewHtml = renderer.render(whatsnewNode)
+ whatsnewHtml = whatsnewTemplateFile.text.replaceAll("__WHATS_NEW__", whatsnewHtml)
+ whatsnewHtmlFile.text = hugoTemplateSubstitutions(whatsnewHtml,
+ [
+ VERSION: JALVIEW_VERSION,
+ DISPLAY_DATE: wnDisplayDate
+ ]
+ )
+ } else if (gradle.taskGraph.hasTask(":linkCheck")) {
+ whatsnewHtmlFile.text = "Development build " + getDate("yyyy-MM-dd HH:mm:ss")
+ }
+
+ }
+
+ inputs.file(releasesTemplateFile)
+ inputs.file(whatsnewTemplateFile)
+ inputs.dir(releasesMdDir)
+ inputs.dir(whatsnewMdDir)
+ outputs.file(releasesHtmlFile)
+ outputs.file(whatsnewHtmlFile)
+}
+
+
+task copyResources(type: Copy) {
+ group = "build"
+ description = "Copy (and make text substitutions in) the resources dir to the build area"
+
+ def inputDir = resourceDir
+ def outputDir = resourcesBuildDir
+ from(inputDir) {
+ include('**/*.txt')
+ include('**/*.md')
+ include('**/*.html')
+ include('**/*.xml')
+ filter(ReplaceTokens,
+ beginToken: '$$',
+ endToken: '$$',
+ tokens: [
+ 'Version-Rel': JALVIEW_VERSION,
+ 'Year-Rel': getDate("yyyy")
+ ]
+ )
+ }
+ from(inputDir) {
+ exclude('**/*.txt')
+ exclude('**/*.md')
+ exclude('**/*.html')
+ exclude('**/*.xml')
+ }
+ into outputDir
+
+ inputs.dir(inputDir)
+ outputs.dir(outputDir)
+}
+
+task copyChannelResources(type: Copy) {
+ dependsOn copyResources
+ group = "build"
description = "Copy the channel resources dir to the build resources area"
def inputDir = "${channelDir}/${resource_dir}"
def outputDir = resourcesBuildDir
- from inputDir
+ from(inputDir) {
+ include(channel_props)
+ filter(ReplaceTokens,
+ beginToken: '__',
+ endToken: '__',
+ tokens: [
+ 'SUFFIX': channelSuffix
+ ]
+ )
+ }
+ from(inputDir) {
+ exclude(channel_props)
+ }
into outputDir
inputs.dir(inputDir)
property "BUILD_DATE", getDate("HH:mm:ss dd MMMM yyyy")
property "VERSION", JALVIEW_VERSION
property "INSTALLATION", INSTALLATION+" git-commit:"+gitHash+" ["+gitBranch+"]"
+ property "JAVA_COMPILE_VERSION", JAVA_INTEGER_VERSION
if (getdownSetAppBaseProperty) {
property "GETDOWNAPPBASE", getdownAppBase
property "GETDOWNAPPDISTDIR", getdownAppDistDir
dependsOn buildResources
dependsOn copyDocs
dependsOn copyHelp
+ dependsOn releasesTemplates
dependsOn convertMdFiles
dependsOn buildIndices
}
def helpLinksCheckerOutFile = file("${jalviewDir}/${utils_dir}/HelpLinksChecker.out")
classpath = files("${jalviewDir}/${utils_dir}")
main = "HelpLinksChecker"
- workingDir = jalviewDir
+ workingDir = "${helpBuildDir}"
args = [ "${helpBuildDir}/${help_dir}", "-nointernet" ]
def outFOS = new FileOutputStream(helpLinksCheckerOutFile, false) // false == don't append
minimize()
}
+task getdownImagesCopy() {
+ inputs.dir getdownImagesDir
+ outputs.dir getdownImagesBuildDir
+
+ doFirst {
+ copy {
+ from(getdownImagesDir) {
+ include("*getdown*.png")
+ }
+ into getdownImagesBuildDir
+ }
+ }
+}
+
+task getdownImagesProcess() {
+ dependsOn getdownImagesCopy
+
+ doFirst {
+ if (backgroundImageText) {
+ if (convertBinary == null) {
+ throw new StopExecutionException("No ImageMagick convert binary installed at '${convertBinaryExpectedLocation}'")
+ }
+ if (!project.hasProperty("getdown_background_image_text_suffix_cmd")) {
+ throw new StopExecutionException("No property 'getdown_background_image_text_suffix_cmd' defined. See channel_gradle.properties for channel ${CHANNEL}")
+ }
+ fileTree(dir: getdownImagesBuildDir, include: "*background*.png").getFiles().each { file ->
+ exec {
+ executable convertBinary
+ args = [
+ file.getPath(),
+ '-font', getdown_background_image_text_font,
+ '-fill', getdown_background_image_text_colour,
+ '-draw', sprintf(getdown_background_image_text_suffix_cmd, channelSuffix),
+ '-draw', sprintf(getdown_background_image_text_commit_cmd, "git-commit: ${gitHash}"),
+ '-draw', sprintf(getdown_background_image_text_date_cmd, getDate("yyyy-MM-dd HH:mm:ss")),
+ file.getPath()
+ ]
+println("CMD=${commandLine}")
+ }
+ }
+ }
+ }
+}
+
+task getdownImages() {
+ dependsOn getdownImagesProcess
+}
task getdownWebsite() {
group = "distribution"
description = "Create the getdown minimal app folder, and website folder for this version of jalview. Website folder also used for offline app installer"
+
+ dependsOn getdownImages
if (buildDist) {
dependsOn makeDist
}
copy {
from channelPropsFile
+ filter(ReplaceTokens,
+ beginToken: '__',
+ endToken: '__',
+ tokens: [
+ 'SUFFIX': channelSuffix
+ ]
+ )
into getdownAppBaseDir
}
getdownWebsiteResourceFilenames += file(channelPropsFile).getName()
if (getdownAltMultiJavaLocation != null && getdownAltMultiJavaLocation.length() > 0) {
props.put("getdown_txt_multi_java_location", getdownAltMultiJavaLocation)
}
- if (getdownImagesDir != null && file(getdownImagesDir).exists()) {
- props.put("getdown_txt_ui.background_image", "${getdownImagesDir}/${getdown_background_image}")
- props.put("getdown_txt_ui.instant_background_image", "${getdownImagesDir}/${getdown_instant_background_image}")
- props.put("getdown_txt_ui.error_background", "${getdownImagesDir}/${getdown_error_background}")
- props.put("getdown_txt_ui.progress_image", "${getdownImagesDir}/${getdown_progress_image}")
- props.put("getdown_txt_ui.icon", "${getdownImagesDir}/${getdown_icon}")
- props.put("getdown_txt_ui.mac_dock_icon", "${getdownImagesDir}/${getdown_mac_dock_icon}")
+ if (getdownImagesBuildDir != null && file(getdownImagesBuildDir).exists()) {
+ props.put("getdown_txt_ui.background_image", "${getdownImagesBuildDir}/${getdown_background_image}")
+ props.put("getdown_txt_ui.instant_background_image", "${getdownImagesBuildDir}/${getdown_instant_background_image}")
+ props.put("getdown_txt_ui.error_background", "${getdownImagesBuildDir}/${getdown_error_background}")
+ props.put("getdown_txt_ui.progress_image", "${getdownImagesBuildDir}/${getdown_progress_image}")
+ props.put("getdown_txt_ui.icon", "${getdownImagesBuildDir}/${getdown_icon}")
+ props.put("getdown_txt_ui.mac_dock_icon", "${getdownImagesBuildDir}/${getdown_mac_dock_icon}")
}
props.put("getdown_txt_title", jalview_name)
}
}
+task install4jDMGBackgroundImageCopy {
+ inputs.file "${install4jDMGBackgroundImageDir}/${install4jDMGBackgroundImageFile}"
+ outputs.dir "${install4jDMGBackgroundImageBuildDir}"
+ doFirst {
+ copy {
+ from(install4jDMGBackgroundImageDir) {
+ include(install4jDMGBackgroundImageFile)
+ }
+ into install4jDMGBackgroundImageBuildDir
+ }
+ }
+}
+
+task install4jDMGBackgroundImageProcess {
+ dependsOn install4jDMGBackgroundImageCopy
+
+ doFirst {
+ if (backgroundImageText) {
+ if (convertBinary == null) {
+ throw new StopExecutionException("No ImageMagick convert binary installed at '${convertBinaryExpectedLocation}'")
+ }
+ if (!project.hasProperty("install4j_background_image_text_suffix_cmd")) {
+ throw new StopExecutionException("No property 'install4j_background_image_text_suffix_cmd' defined. See channel_gradle.properties for channel ${CHANNEL}")
+ }
+ fileTree(dir: install4jDMGBackgroundImageBuildDir, include: "*.png").getFiles().each { file ->
+ exec {
+ executable convertBinary
+ args = [
+ file.getPath(),
+ '-font', install4j_background_image_text_font,
+ '-fill', install4j_background_image_text_colour,
+ '-draw', sprintf(install4j_background_image_text_suffix_cmd, channelSuffix),
+ '-draw', sprintf(install4j_background_image_text_commit_cmd, "git-commit: ${gitHash}"),
+ '-draw', sprintf(install4j_background_image_text_date_cmd, getDate("yyyy-MM-dd HH:mm:ss")),
+ file.getPath()
+ ]
+ }
+ }
+ }
+ }
+}
+
+task install4jDMGBackgroundImage {
+ dependsOn install4jDMGBackgroundImageProcess
+}
+
task installerFiles(type: com.install4j.gradle.Install4jTask) {
group = "distribution"
description = "Create the install4j installers"
dependsOn getdown
dependsOn copyInstall4jTemplate
dependsOn cleanInstallersDataFiles
+ dependsOn install4jDMGBackgroundImage
projectFile = install4jConfFile
'INTERNAL_ID': install4jInternalId,
'WINDOWS_APPLICATION_ID': install4jWinApplicationId,
'MACOS_DMG_DS_STORE': install4jDMGDSStore,
- 'MACOS_DMG_BG_IMAGE': install4jDMGBackgroundImage,
+ 'MACOS_DMG_BG_IMAGE': "${install4jDMGBackgroundImageBuildDir}/${install4jDMGBackgroundImageFile}",
'WRAPPER_LINK': getdownWrapperLink,
'BASH_WRAPPER_SCRIPT': getdown_bash_wrapper_script,
'POWERSHELL_WRAPPER_SCRIPT': getdown_powershell_wrapper_script,
}
}
-def hugoTemplateSubstitutions(String input, Map extras=null) {
- def replacements = [
- DATE: getDate("yyyy-MM-dd"),
- CHANNEL: propertiesChannelName,
- APPLICATION_NAME: applicationName,
- GIT_HASH: gitHash,
- GIT_BRANCH: gitBranch,
- VERSION: JALVIEW_VERSION,
- JAVA_VERSION: JAVA_VERSION,
- VERSION_UNDERSCORES: JALVIEW_VERSION_UNDERSCORES,
- DRAFT: "false",
- JVL_HEADER: ""
- ]
- def output = input
- if (extras != null) {
- extras.each{ k, v ->
- output = output.replaceAll("__${k}__", ((v == null)?"":v))
- }
- }
- replacements.each{ k, v ->
- output = output.replaceAll("__${k}__", ((v == null)?"":v))
- }
- return output
-}
-
-def mdFileComponents(File mdFile, def dateOnly=false) {
- def map = [:]
- def content = ""
- if (mdFile.exists()) {
- def inFrontMatter = false
- def firstLine = true
- mdFile.eachLine { line ->
- if (line.matches("---")) {
- def prev = inFrontMatter
- inFrontMatter = firstLine
- if (inFrontMatter != prev)
- return false
- }
- if (inFrontMatter) {
- def m = null
- if (m = line =~ /^date:\s*(\d{4}-\d{2}-\d{2} \d{2}:\d{2}:\d{2})/) {
- map["date"] = new Date().parse("yyyy-MM-dd HH:mm:ss", m[0][1])
- } else if (m = line =~ /^date:\s*(\d{4}-\d{2}-\d{2})/) {
- map["date"] = new Date().parse("yyyy-MM-dd", m[0][1])
- } else if (m = line =~ /^channel:\s*(\S+)/) {
- map["channel"] = m[0][1]
- } else if (m = line =~ /^version:\s*(\S+)/) {
- map["version"] = m[0][1]
- } else if (m = line =~ /^\s*([^:]+)\s*:\s*(\S.*)/) {
- map[ m[0][1] ] = m[0][2]
- }
- if (dateOnly && map["date"] != null) {
- return false
- }
- } else {
- if (dateOnly)
- return false
- content += line+"\n"
- }
- firstLine = false
- }
- }
- return dateOnly ? map["date"] : [map, content]
-}
-
-task hugoTemplates {
- group "website"
- description "Create partially populated md pages for hugo website build"
-
- def hugoTemplatesDir = file("${jalviewDir}/${hugo_templates_dir}")
- def hugoBuildDir = "${jalviewDir}/${hugo_build_dir}"
- def templateFiles = fileTree(dir: hugoTemplatesDir)
- def releaseMdFile = file("${jalviewDir}/${releases_dir}/release-${JALVIEW_VERSION_UNDERSCORES}.md")
- def whatsnewMdFile = file("${jalviewDir}/${whatsnew_dir}/whatsnew-${JALVIEW_VERSION_UNDERSCORES}.md")
- def oldJvlFile = file("${jalviewDir}/${hugo_old_jvl}")
- def jalviewjsFile = file("${jalviewDir}/${hugo_jalviewjs}")
-
- doFirst {
- // specific release template for version archive
- def changes = ""
- def whatsnew = null
- def givenDate = null
- def givenChannel = null
- def givenVersion = null
- if (CHANNEL == "RELEASE") {
- def (map, content) = mdFileComponents(releaseMdFile)
- givenDate = map.date
- givenChannel = map.channel
- givenVersion = map.version
- changes = content
- if (givenVersion != null && givenVersion != JALVIEW_VERSION) {
- throw new GradleException("'version' header (${givenVersion}) found in ${releaseMdFile} does not match JALVIEW_VERSION (${JALVIEW_VERSION})")
- }
-
- if (whatsnewMdFile.exists())
- whatsnew = whatsnewMdFile.text
- }
-
- def oldJvl = oldJvlFile.exists() ? oldJvlFile.collect{it} : []
- def jalviewjsLink = jalviewjsFile.exists() ? jalviewjsFile.collect{it} : []
-
- def changesHugo = null
- if (changes != null) {
- changesHugo = '<div class="release_notes">\n\n'
- def inSection = false
- changes.eachLine { line ->
- def m = null
- if (m = line =~ /^##([^#].*)$/) {
- if (inSection) {
- changesHugo += "</div>\n\n"
- }
- def section = m[0][1].trim()
- section = section.toLowerCase()
- section = section.replaceAll(/ +/, "_")
- section = section.replaceAll(/[^a-z0-9_\-]/, "")
- changesHugo += "<div class=\"${section}\">\n\n"
- inSection = true
- } else if (m = line =~ /^(\s*-\s*)<!--([^>]+)-->(.*?)(<br\/?>)?\s*$/) {
- def comment = m[0][2].trim()
- if (comment != "") {
- comment = comment.replaceAll('"', """)
- def issuekeys = []
- comment.eachMatch(/JAL-\d+/) { jal -> issuekeys += jal }
- def newline = m[0][1]
- if (comment.trim() != "")
- newline += "{{<comment>}}${comment}{{</comment>}} "
- newline += m[0][3].trim()
- if (issuekeys.size() > 0)
- newline += " {{< jal issue=\"${issuekeys.join(",")}\" alt=\"${comment}\" >}}"
- if (m[0][4] != null)
- newline += m[0][4]
- line = newline
- }
- }
- changesHugo += line+"\n"
- }
- if (inSection) {
- changesHugo += "\n</div>\n\n"
- }
- changesHugo += '</div>'
- }
-
- templateFiles.each{ templateFile ->
- def newFileName = string(hugoTemplateSubstitutions(templateFile.getName()))
- def relPath = hugoTemplatesDir.toPath().relativize(templateFile.toPath()).getParent()
- def newRelPathName = hugoTemplateSubstitutions( relPath.toString() )
-
- def outPathName = string("${hugoBuildDir}/$newRelPathName")
-
- copy {
- from templateFile
- rename(templateFile.getName(), newFileName)
- into outPathName
- }
-
- def newFile = file("${outPathName}/${newFileName}".toString())
- def content = newFile.text
- newFile.text = hugoTemplateSubstitutions(content,
- [
- WHATSNEW: whatsnew,
- CHANGES: changesHugo,
- DATE: givenDate == null ? "" : givenDate.format("yyyy-MM-dd"),
- DRAFT: givenDate == null ? "true" : "false",
- JALVIEWJSLINK: jalviewjsLink.contains(JALVIEW_VERSION) ? "true" : "false",
- JVL_HEADER: oldJvl.contains(JALVIEW_VERSION) ? "jvl: true" : ""
- ]
- )
- }
-
- }
-
- inputs.file(oldJvlFile)
- inputs.dir(hugoTemplatesDir)
- inputs.property("JALVIEW_VERSION", { JALVIEW_VERSION })
- inputs.property("CHANNEL", { CHANNEL })
-}
-
-def getMdDate(File mdFile) {
- return mdFileComponents(mdFile, true)
-}
-
-def getMdSections(String content) {
- def sections = [:]
- def sectionContent = ""
- def sectionName = null
- content.eachLine { line ->
- def m = null
- if (m = line =~ /^##([^#].*)$/) {
- if (sectionName != null) {
- sections[sectionName] = sectionContent
- sectionName = null
- sectionContent = ""
- }
- sectionName = m[0][1].trim()
- sectionName = sectionName.toLowerCase()
- sectionName = sectionName.replaceAll(/ +/, "_")
- sectionName = sectionName.replaceAll(/[^a-z0-9_\-]/, "")
- } else if (sectionName != null) {
- sectionContent += line+"\n"
- }
- }
- if (sectionContent != null) {
- sections[sectionName] = sectionContent
- }
- return sections
-}
-
-task releasesTemplates {
- def releasesTemplateFile = file("${jalviewDir}/${releases_template}")
- def whatsnewTemplateFile = file("${jalviewDir}/${whatsnew_template}")
- def releasesHtmlFile = file("${helpSourceDir}/${releases_html}")
- def whatsnewHtmlFile = file("${helpSourceDir}/${whatsnew_html}")
- def releasesMdDir = "${jalviewDir}/${releases_dir}"
- def whatsnewMdDir = "${jalviewDir}/${whatsnew_dir}"
-
- doFirst {
- def releaseFiles = fileTree(dir: releasesMdDir, include: "release-*.md")
- def releaseFilesDates = releaseFiles.collectEntries {
- [(it): getMdDate(it)]
- }
- releaseFiles = releaseFiles.sort { a,b -> releaseFilesDates[a].compareTo(releaseFilesDates[b]) }
-
- def releasesTemplate = releasesTemplateFile.text
- def m = releasesTemplate =~ /(?s)__VERSION_LOOP_START__(.*)__VERSION_LOOP_END__/
- def versionTemplate = m[0][1]
-
- MutableDataSet options = new MutableDataSet()
-
- def extensions = new ArrayList<>()
- options.set(Parser.EXTENSIONS, extensions)
- options.set(Parser.HTML_BLOCK_COMMENT_ONLY_FULL_LINE, true)
-
- Parser parser = Parser.builder(options).build()
- HtmlRenderer renderer = HtmlRenderer.builder(options).build()
-
- def actualVersions = releaseFiles.collect { rf ->
- def (rfMap, rfContent) = mdFileComponents(rf)
- return rfMap.version
- }
- def versionsHtml = ""
- def linkedVersions = []
- releaseFiles.reverse().each { rFile ->
- def (rMap, rContent) = mdFileComponents(rFile)
-
- def versionLink = ""
- def partialVersion = ""
- def firstPart = true
- rMap.version.split("\\.").each { part ->
- def displayPart = ( firstPart ? "" : "." ) + part
- partialVersion += displayPart
- if (
- linkedVersions.contains(partialVersion)
- || ( actualVersions.contains(partialVersion) && partialVersion != rMap.version )
- ) {
- versionLink += displayPart
- } else {
- versionLink += "<a id=\"Jalview.${partialVersion}\">${displayPart}</a>"
- linkedVersions += partialVersion
- }
- firstPart = false
- }
- def displayDate = releaseFilesDates[rFile].format("d MMMMM yyyy")
-
- def rContentSections = getMdSections(rContent)
- def rVersion = versionTemplate
- if (rVersion != "") {
- Node newFeaturesNode = parser.parse(rContentSections["new_features"])
- String newFeaturesHtml = renderer.render(newFeaturesNode)
- Node issuesResolvedNode = parser.parse(rContentSections["issues_resolved"])
- String issuesResolvedHtml = renderer.render(issuesResolvedNode)
- rVersion = hugoTemplateSubstitutions(rVersion,
- [
- VERSION: rMap.version,
- VERSION_LINK: versionLink,
- DISPLAY_DATE: displayDate,
- NEW_FEATURES: newFeaturesHtml,
- ISSUES_RESOLVED: issuesResolvedHtml
- ]
- )
- versionsHtml += rVersion
- }
- }
-
- releasesTemplate = releasesTemplate.replaceAll("(?s)__VERSION_LOOP_START__.*__VERSION_LOOP_END__", versionsHtml)
- releasesTemplate = hugoTemplateSubstitutions(releasesTemplate)
- releasesHtmlFile.text = releasesTemplate
- }
-
- inputs.file(releasesTemplateFile)
- inputs.file(whatsnewTemplateFile)
- inputs.dir(releasesMdDir)
- inputs.dir(whatsnewMdDir)
- outputs.file(releasesHtmlFile)
- outputs.file(whatsnewHtmlFile)
-}
-
-
task helppages {
+ group "help"
+ description "Copies all help pages to build dir. Runs ant task 'pubhtmlhelp'."
+
dependsOn copyHelp
dependsOn pubhtmlhelp
git://source.jalview.org / jalview.git / blobdiff