JAL-3130 specify module list when launching new Jalview for CLI tests

[jalview.git] / build.gradle

diff --git a/build.gradle b/build.gradle
index 7b6cd6b..ed8a9ab 100644 (file)
--- a/build.gradle
+++ b/build.gradle
@@ -4,7 +4,7 @@ import org.gradle.internal.os.OperatingSystem
 
 buildscript {
   dependencies {
-    //classpath files("$gradlePluginsDir/gradle-macappbundle-2.3.0-patched-2.3.0.jar")
+        classpath 'org.openclover:clover:4.3.1'
   }
 }
 
@@ -18,12 +18,14 @@ plugins {
 repositories {
   jcenter()
   mavenCentral()
+  mavenLocal()
   flatDir {
     dirs gradlePluginsDir
   }
 }
 
 mainClassName = launcherClass
+def cloverInstrDir = file("$buildDir/sources-instr")
 
 sourceSets {
 
@@ -50,6 +52,32 @@ sourceSets {
     runtimeClasspath = compileClasspath
   }
 
+  modules {
+    compileClasspath = fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"])
+
+    runtimeClasspath = compileClasspath
+  }
+  
+  clover {
+    java {
+        srcDirs = [ cloverInstrDir ]
+        outputDir = file("${buildDir}/clover-classes")
+    }
+    
+    resources {
+      srcDirs = sourceSets.main.resources.srcDirs
+    }
+    compileClasspath = configurations.cloverRuntime + files( sourceSets.clover.java.outputDir )
+    compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir", include: ["**/*.jar"])
+    compileClasspath += fileTree(dir: "$jalviewDir/$libDir", include: ["*.jar"])
+    if (JAVA_VERSION.equals("1.8")) {
+      print("ADDING J11LIBS TO CLASSPATH")
+      compileClasspath += fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"])
+    }
+
+    runtimeClasspath = compileClasspath
+  }
+  
   test {
     java {
       srcDirs "$jalviewDir/$testSourceDir"
@@ -60,21 +88,71 @@ sourceSets {
       srcDirs = sourceSets.main.resources.srcDirs
     }
 
-    compileClasspath = sourceSets.main.compileClasspath
-    compileClasspath += files( sourceSets.test.java.outputDir )
+
+    compileClasspath = configurations.cloverRuntime 
+    compileClasspath += files( sourceSets.test.java.outputDir ) 
+    compileClasspath += files( sourceSets.clover.java.outputDir )
+    compileClasspath += files( sourceSets.main.resources.srcDirs)
     compileClasspath += fileTree(dir: "$jalviewDir/$utilsDir", include: ["**/*.jar"])
+    compileClasspath += fileTree(dir: "$jalviewDir/$libDir", include: ["*.jar"])
+    if (JAVA_VERSION.equals("1.8")) {
+      print("ADDING J11LIBS TO CLASSPATH")
+      compileClasspath += fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"])
+    }
 
     runtimeClasspath = compileClasspath
   }
+}
 
-  modules {
-    compileClasspath = fileTree(dir: "$jalviewDir/$j11libDir", include: ["*.jar"])
+// clover bits
+dependencies {
+  cloverCompile 'org.openclover:clover:4.3.1'
+  testCompile 'org.openclover:clover:4.3.1'
+}
+
+configurations {
+    cloverRuntime
+    cloverRuntime.extendsFrom cloverCompile
+}
+ 
+task cloverInstr() {
+  // only instrument source, we build test classes as normal
+    inputs.files files (sourceSets.main.allJava) // , fileTree(dir:"$jalviewDir/$testSourceDir", include: ["**/*.java"]))
+    outputs.dir cloverInstrDir
+
+    doFirst {
+        delete cloverInstrDir
+        def argsList = ["--initstring", "${buildDir}/clover/clover.db",
+                        "-d", "${buildDir}/sources-instr"]
+        argsList.addAll(inputs.files.files.collect({ file ->
+            file.absolutePath
+        }))
+        String[] args = argsList.toArray()
+        println("About to instrument "+args.length +" files")
+        com.atlassian.clover.CloverInstr.mainImpl(args)
+    }
+}
 
-    runtimeClasspath = compileClasspath
-  }
+test.dependsOn cloverInstr
 
+ 
+task cloverReport {
+    inputs.dir "${buildDir}/clover"
+    outputs.dir "${reportsDir}/clover"
+    onlyIf {
+        file("${buildDir}/clover/clover.db").exists()
+    }
+    doFirst {
+        def argsList = ["--initstring", "${buildDir}/clover/clover.db",
+                        "-o", "${reportsDir}/clover"]
+        String[] args = argsList.toArray()
+        com.atlassian.clover.reporters.html.HtmlReporter.runReport(args)
+    }
 }
 
+// end clover bits
+
+
 compileJava {
 
   doFirst {
@@ -95,12 +173,54 @@ compileJava {
 
 }
 
+compileTestJava {
+  dependsOn compileCloverJava
+  doFirst {
+    if (JAVA_VERSION.equals("1.8")) {
+      sourceCompatibility = 1.8
+      targetCompatibility = 1.8
+    } else if (JAVA_VERSION.equals("11")) {
+      sourceCompatibility = 11
+      targetCompatibility = 11
+
+      options.compilerArgs = [
+        '--module-path', sourceSets.modules.compileClasspath.asPath,
+        '--add-modules', j11modules
+      ]
+    }
+    print ("Setting target compatibility to "+targetCompatibility+"\n")
+  }
+  classpath += configurations.cloverRuntime
+}
+
+
+compileCloverJava {
+
+  doFirst {
+    if (JAVA_VERSION.equals("1.8")) {
+      sourceCompatibility = 1.8
+      targetCompatibility = 1.8
+    } else if (JAVA_VERSION.equals("11")) {
+      sourceCompatibility = 11
+      targetCompatibility = 11
+
+      options.compilerArgs += [
+        '--module-path', sourceSets.modules.compileClasspath.asPath,
+        '--add-modules', j11modules
+      ]
+    }
+    print ("Setting target compatibility to "+targetCompatibility+"\n")
+  }
+  classpath += configurations.cloverRuntime
+}
+
 clean {
   delete sourceSets.main.java.outputDir
 }
 
 cleanTest {
   delete sourceSets.test.java.outputDir
+  delete cloverInstrDir
 }
 
 def getDate(format) {
@@ -180,6 +300,7 @@ task syncLib(type: Sync) {
 task syncResources(type: Sync) {
   from "$jalviewDir/$resourceDir"
   include "**/*.*"
+  exclude "install4j"
   into "$jalviewDir/$classesDir"
   preserve {
     include "**"
@@ -192,15 +313,35 @@ task prepare {
   dependsOn copyHelp
 }
 
+
 //testReportDirName = "test-reports" // note that test workingDir will be $jalviewDir
 test {
   dependsOn prepare
-  dependsOn compileJava
-  useTestNG {
+  
+  
+  useTestNG()
+  options {
     includeGroups testngGroups
+    preserveOrder true
   }
+  
   workingDir = jalviewDir
   //systemProperties 'clover.jar' System.properties.clover.jar
+  if (JAVA_VERSION.equals("1.8")) {
+    sourceCompatibility = 1.8
+    targetCompatibility = 1.8
+  } else if (JAVA_VERSION.equals("11")) {
+    sourceCompatibility = 11
+    targetCompatibility = 11
+
+    jvmArgs += [
+      '--module-path',
+      sourceSets.modules.compileClasspath.asPath,
+      '--add-modules',
+      j11modules
+    ]
+  }
+  print ("Setting target compatibility to "+targetCompatibility+"\n")
 }
 
 task buildIndices(type: JavaExec) {
@@ -491,3 +632,4 @@ task installers(type: com.install4j.gradle.Install4jTask) {
   inputs.dir(project.ext.getdownWebsiteDir)
   outputs.dir("$jalviewDir/$install4jBuildDir")
 }
+