<!-- Key Password -->
<property name="jalview.key.pass" value="alignmentisfun" />
+
+
<!-- Don't change anything below here unless you know what you are doing! -->
<!-- Url path for WebStart in JNLP file -->
<property name="WebStartLocation" value="http://www.jalview.org/webstart" />
<property name="WebStartImage" value="JalviewLogo_big.png"/>
<!-- J2SE version needed for webstart launch -->
<property name="j2sev" value="1.6+"/>
+
+ <!-- Permissions for running Java applets and applications. -->
+ <!-- Defaults are those suitable for deploying jalview webstart www.jalview.org -->
+ <property name="application.codebase" value="*.jalview.org"/>
+ <!-- and allowing the applet to be deployed from any URL -->
+ <property name="applet.codebase" value="*"/>
+ <property name="applet.caller-codebase" value="${applet.codebase}"/>
+
<!-- build directory configuration -->
<property name="libDir" value="lib" />
<property name="resourceDir" value="resources" />
<target name="makefulldist" depends="makedist">
<!-- the default keystore details might need to be edited here -->
- <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+ <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false" sigalg="SHA1withRSA">
<fileset dir="${packageDir}">
<include name="*.jar" />
<include name="*.jar"/>
</fileset>
</delete>
- <jar destfile="${packageDir}/${outputJar}">
+ <jar destfile="${packageDir}/${outputJar}" index="true">
<manifest>
<attribute name="Main-Class" value="jalview.bin.Jalview" />
+ <attribute name="Permissions" value="all-permissions" />
+ <attribute name="Application-Name" value="Jalview Desktop"/>
+ <attribute name="Codebase" value="${application.codebase}"/>
</manifest>
<fileset dir="${outputDir}/">
<exclude name="cache*/**" />
<target name="packageApplet" depends="compileApplet, buildPropertiesFile">
<copy file="${resourceDir}/images/idwidth.gif" toFile="${outputDir}/images/idwidth.gif" />
<copy file="${resourceDir}/images/link.gif" toFile="${outputDir}/images/link.gif" />
- <jar destfile="in.jar">
+ <jar destfile="in.jar" index="true">
<manifest>
<attribute name="Main-Class" value="jalview.bin.JalviewLite" />
+ <attribute name="Application-Name" value="JalviewLite"/>
+ <attribute name="Codebase" value="${applet.codebase}"/>
</manifest>
<fileset dir="${outputDir}">
<include name="com/**" />
<injar file="in.jar" />
<outjar file="${jalviewLiteJar}" />
<libraryjar refid="obfuscateDeps.path" />
+ <dontwarn/>
<keep access="public" type="class" name="jalview.bin.JalviewLite">
<field access="public" />
<method access="public" />
<constructor access="public" />
</keep>
+ <keep access="public" type="class" name="jalview.appletgui.AlignFrame">
+ <field access="public" />
+ <method access="public" />
+ <constructor access="public" />
+ </keep>
<!-- -libraryjars "${obfuscateDeps}"
-injars in.jar
-outjars jalviewApplet.jar
<include name="jmol/*"/>
</fileset>
<fileset dir=".">
- <include name="jalviewApplet.jar"/>
+ <include name="${jalviewLiteJar}"/>
</fileset>
<fileset dir="appletlib">
<include name="**/*"/>
</fileset>
</copy>
-
+ <presetdef name="applet.jar">
+ <!-- build a signed applet with 'all-permissions' -
+ Needs 'param name="permissions' value="all-permissions"' in applet tag
+ JalviewLite+JmolApplet linked sequence/structure fails
+ Mixed code warnings are raised
+ -->
+ <jar update="true" index="true">
+ <manifest>
+ <attribute name="Application-Name" value="JalviewLite"/>
+ <attribute name="Permissions" value="all-permissions"/>
+ <attribute name="Codebase" value="${applet.codebase}"/>
+ <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}"/>
+ <attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}"/>
+ </manifest>
+ </jar>
+ </presetdef>
+ <presetdef name="s_applet.jar">
+ <!-- build signed applet with sandbox permissions -
+ Needs 'param name="permissions' value="sandbox"' in applet tag
+ Preserves Pre-Java 1.7_u45 behavior once 'permissions' parameter added to applet tag
+-->
+
+ <jar update="true" index="true" jarfile="@{jarfile}">
+ <manifest>
+ <attribute name="Application-Name" value="JalviewLite" />
+ <attribute name="Permissions" value="sandbox" />
+ <attribute name="Codebase" value="${applet.codebase}" />
+ <attribute name="Caller-Allowable-Codebase" value="${applet.caller-codebase}" />
+ <attribute name="Application-Library-Allowable-Codebase" value="${applet.codebase}" />
+ </manifest>
+ </jar>
+ </presetdef>
+ <presetdef name="applet_tl.jar">
+ <!-- build signed applet with trusted library/trusted permissions -
+ Needs 'param name="permissions' value="all-permissions"' in applet tag
+ j1.7_45:
+ No mixed code warnings raised
+ Jmol/JalviewLite sequence/structure example doesn't link structures
+ Raises dialog asking user to allow page to control applet via LiveConnect javascript
+
+ -->
+
+ <jar update="true" index="true" jarfile="@{jarfile}">
+ <manifest>
+ <attribute name="Application-Name" value="JalviewLite"/>
+ <attribute name="Permissions" value="all-permissions" />
+ <attribute name="Codebase" value="${applet.codebase}"/>
+ <attribute name="Trusted-Only" value="true"/>
+ <attribute name="Trusted-Library" value="true"/>
+ </manifest>
+ </jar>
+
+ </presetdef>
+ <presetdef name="applet_to.jar">
+ <!-- not fully test variant (yet) -->
+ <jar update="true" index="true" jarfile="@{jarfile}">
+ <manifest>
+ <attribute name="Application-Name" value="JalviewLite" />
+ <attribute name="Permissions" value="all-permissions" />
+ <attribute name="Codebase" value="${applet.codebase}" />
+ <attribute name="Trusted-Only" value="true" />
+ </manifest>
+ </jar>
+ </presetdef>
+ <!-- create differently privileged artefacts -->
+ <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/tl_${jalviewLiteJar}"/>
+ <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/tl_${jmolJar}"/>
+ <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/to_${jalviewLiteJar}" />
+ <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/to_${jmolJar}" />
+ <copy file="${packageDir}/examples/${jalviewLiteJar}" tofile="${packageDir}/examples/s_${jalviewLiteJar}" />
+ <copy file="${packageDir}/examples/${jmolJar}" tofile="${packageDir}/examples/s_${jmolJar}" />
+ <applet.jar jarfile="${packageDir}/examples/ap_${jalviewLiteJar}" />
+ <applet.jar jarfile="${packageDir}/examples/ap_${jmolJar}" />
+ <applet_tl.jar jarfile="${packageDir}/examples/tl_${jalviewLiteJar}"/>
+ <applet_tl.jar jarfile="${packageDir}/examples/tl_${jmolJar}"/>
+ <s_applet.jar jarfile="${packageDir}/examples/${jalviewLiteJar}" />
+ <s_applet.jar jarfile="${packageDir}/examples/${jmolJar}" />
+ <applet_to.jar jarfile="${packageDir}/examples/to_${jalviewLiteJar}" />
+ <applet_to.jar jarfile="${packageDir}/examples/to_${jmolJar}" />
+ <!-- todo - write examples/downloads for alternate versions of the applet -->
+ <signjar storepass="${jalview.keystore.pass}" keypass="${jalview.key.pass}" keystore="${jalview.keystore}" alias="${jalview.key}" lazy="false" verbose="false">
+
+ <fileset dir="${packageDir}/examples">
+ <include name="*.jar" />
+ </fileset>
+ </signjar>
</target>
<target name="sourcedoc" description="Create jalview source documentation pages" depends="init">
<javadoc destdir="${javadocDir}">
git://source.jalview.org / jalview.git / blobdiff