Code for Jpred Job java Bean

[proteocache.git] / engine / compbio / engine / JpredJob.java

diff --git a/engine/compbio/engine/JpredJob.java b/engine/compbio/engine/JpredJob.java
new file mode 100644 (file)
index 0000000..a606746
--- /dev/null
+++ b/engine/compbio/engine/JpredJob.java
@@ -0,0 +1,64 @@
+package compbio.engine;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import compbio.cassandra.FastaSequence;
+
+public class JpredJob extends Job {
+       private String protein;
+       private String log;
+       private List<FastaSequence> predictions;
+       private List<FastaSequence> alignment;
+
+       public JpredJob() {
+               super();
+       }
+
+       public JpredJob(String jobid, String date1, String date2) {
+               super(jobid, date1, date2);
+               this.protein = protein;
+               predictions = new ArrayList<FastaSequence>();
+               alignment  = new ArrayList<FastaSequence>();
+               log = "";
+       }
+
+       public JpredJob(String jobid, String date1, String date2, List<FastaSequence> alignment, List<FastaSequence> predictions) {
+               super(jobid, date1, date2);
+               this.protein = protein;
+               this.alignment = alignment;
+               this.predictions = predictions; 
+       }
+
+       public void setProtein(String protein) {
+               this.protein = protein;
+       }
+
+       public String getProtein() {
+               return protein;
+       }
+
+       public void setLog(String log) {
+               this.log = log;
+       }
+
+       public String getLog() {
+               return log;
+       }
+
+       public void setAlignment(List<FastaSequence> al) {
+               this.alignment = al;
+       }
+
+       public List<FastaSequence> getAlignment() {
+               return alignment;
+       }
+
+       public void setPredictions(List<FastaSequence> pr) {
+               this.predictions = pr;
+       }
+
+       public List<FastaSequence> getPredictions() {
+               return predictions;
+       }
+}