JAL-1996 removed quick links in example pages, added one minimal applet embedding...

[jalview.git] / examples / appletDeployment.html

diff --git a/examples/appletDeployment.html b/examples/appletDeployment.html
index 87953df..0301225 100644 (file)
--- a/examples/appletDeployment.html
+++ b/examples/appletDeployment.html
@@ -18,10 +18,10 @@
 -->
 
 
-<div id="view_decorated" name="view_decorated"  style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#appletDeployment"> here</a> to view decorated page</b></div>
+<div id="view_decorated" name="view_decorated"  style="margin:8px; padding:10px; border: 2px solid red; text-align:center; display:none;"><b>Click <a href="index.html#appletDeployment"> here </a> to view decorated page</b></div>
 
 <!-- content start -->
-<h2><a name="appletDeployment"/>Notes on applet deployment</h2>
+<h2 name="appletDeployment"> Notes on applet deployment</h2>
 <table width=80% border="1">
   <tr><th colspan="2" align="center">Required Dependency Downloads</th></tr>
   <tr>
@@ -46,13 +46,30 @@
   </tr>
 </table>
 
-        <ul>
+<p>The snippet below shows a mininmal code for embeding Jalview applet into a web page.    
+<pre><code>
+&lt;applet code="jalview.bin.JalviewLite" width="756" height="560" archive="jalviewApplet.jar,JmolApplet-14.2.14_2015.06.11.jar,java-json.jar,json_simple-1.1.jar"&gt;
+       &lt;param name="permissions" value="sandbox" /&gt;
+       &lt;param name="file" value="plantfdx.fa" /&gt;
+       &lt;param name="features" value="plantfdx.features" /&gt;
+       &lt;param name="userDefinedColour" value="C=yellow; R,K,H=FF5555; D,E=5555FF" /&gt;
+       &lt;param name="showFullId" value="false" /&gt;
+       &lt;param name="embedded" value="true" /&gt;
+       &lt;param name="linkLabel_1" value="Uniprot" /&gt;
+       &lt;param name="linkUrl_1"      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$" /&gt;
+       &lt;param name="linkLabel_2" value="EMBL-EBI Search" /&gt;
+       &lt;param name="linkUrl_2"      value="http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$" /&gt;
+       &lt;param name="APPLICATION_URL" value="http://www.jalview.org/services/launchApp" /&gt;
+&lt;/applet&gt;
+</code></pre> 
+
+For more information and advanced options, see the <a href="javascript:doSubmit('appletParameters')"><strong>applet parameters page</strong></a>, and other documentation in the links to the left. 
+  <ul>
           <li>Package all your data files into a single (or multiple) zip / jar 
             files. This is very useful to reduce download time of large data files. 
             The applet archive tag can take multiple entries separated by commas, 
             eg<br>
-            <pre>&lt;applet code=&quot;jalview.bin.JalviewLite&quot;<em><strong> 
-            archive=&quot;jalviewApplet.jar, mydata.zip&quot;</strong></em>&gt;
+            <pre>&lt;applet code=&quot;jalview.bin.JalviewLite&quot;<em><strong> archive=&quot;jalviewApplet.jar, mydata.zip&quot;</strong></em>&gt;
             </pre></li>
           <li> Use Jalview for input to a HTML form. For an example of how to 
             code this using Javascript, click <a href="javascript:doSubmit('formComplete')">here</a>.