JAL-629 improvements to argparser toString. Improvements to cli paeFile structure...

[jalview.git] / examples / argfiles / test_fab41.txt

diff --git a/examples/argfiles/test_fab41.txt b/examples/argfiles/test_fab41.txt
index a1db923..e6f7627 100644 (file)
--- a/examples/argfiles/test_fab41.txt
+++ b/examples/argfiles/test_fab41.txt
@@ -1,14 +1,13 @@
 --open=./examples/test_fab41.result/sample.a2m
---colour=clustal
+--colour=gecos:flower
 --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3.pdb
---paematrix=./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json
+--paematrix=[label=pAE R1-M3]./examples/test_fab41.result/test_fab41_unrelaxed_rank_1_model_3_scores.json
 --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4.pdb
---paematrix=./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4_scores.json
+--paematrix=[label=pAE R2-M4]./examples/test_fab41.result/test_fab41_unrelaxed_rank_2_model_4_scores.json
 --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2.pdb
---paematrix=./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2_scores.json
+--paematrix=[label=pAE R3-M2]./examples/test_fab41.result/test_fab41_unrelaxed_rank_3_model_2_scores.json
 --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_4_model_5.pdb
---paematrix=./examples/test_fab41.result/test_fab41_unrelaxed_rank_4_model_5_scores.json
+--paematrix=[label=pAE R4-M5]./examples/test_fab41.result/test_fab41_unrelaxed_rank_4_model_5_scores.json
 --structure=./examples/test_fab41.result/test_fab41_unrelaxed_rank_5_model_1.pdb
---paematrix=./examples/test_fab41.result/test_fab41_unrelaxed_rank_5_model_1_scores.json
+--paematrix=[label=pAE R5-M1]./examples/test_fab41.result/test_fab41_unrelaxed_rank_5_model_1_scores.json
 --image=output1.html
---close