JAL-1665 getSequenceFeatures; Desktop.getAlignFrames camel-cased

[jalview.git] / examples / groovy / selectColumnsByFeatureAndGroup.groovy

diff --git a/examples/groovy/selectColumnsByFeatureAndGroup.groovy b/examples/groovy/selectColumnsByFeatureAndGroup.groovy
index 0a16391..ea2c596 100644 (file)
--- a/examples/groovy/selectColumnsByFeatureAndGroup.groovy
+++ b/examples/groovy/selectColumnsByFeatureAndGroup.groovy
@@ -11,7 +11,7 @@ def nal=0;
 def nfeat=0;
 def nseq=0;
 
-for (ala in Jalview.getAlignframes()) {
+for (ala in Jalview.getAlignFrames()) {
   def al = ala.viewport.alignment;
     if (al!=null)
     {
@@ -21,7 +21,7 @@ for (ala in Jalview.getAlignframes()) {
       {
           def tfeat=0;
         if (sq!=null) {
-          SequenceFeature[] sf = sq.getDatasetSequence().getSequenceFeatures();
+          SequenceFeature[] sf = sq.getSequenceFeatures();
           for (sfpos in sf)
           {
             if (sfpos!=null && sfpos.getType().equals(toselect))