JAL-1183 dialog queue

[jalview.git] / examples / jalviewLiteJs.html

diff --git a/examples/jalviewLiteJs.html b/examples/jalviewLiteJs.html
index 434d1a7..197ef56 100644 (file)
--- a/examples/jalviewLiteJs.html
+++ b/examples/jalviewLiteJs.html
@@ -215,11 +215,21 @@ public String getAlignmentFrom(AlignFrame alf, String format)
 public String getAlignmentFrom(AlignFrame alf, String format, String suffix)
 
 // add the given features or annotation to the current alignment
+// if features are loaded, feature display is automatically enabled
 public void loadAnnotation(String annotation)
 
 // add the given features or annotation to the given alignment view
+// if features are loaded, feature display is automatically enabled
 public void loadAnnotationFrom(AlignFrame alf, String annotation)
 
+// parse the given string as a jalview or GFF features file and optionally enable feature display on the current alignment
+// (v2.7.1)
+public abstract void loadFeatures(String features, boolean autoenabledisplay)
+
+// parse the given string as a jalview or GFF features file and optionally enable feature display on the given alignment
+// (v2.7.1)
+public abstract void loadFeaturesFrom(AlignFrame alf, String features, boolean autoenabledisplay)
+
 // get the sequence features in the given format (Jalview or GFF)
 public String getFeatures(String format)
 
@@ -246,6 +256,8 @@ public AlignFrame newViewFrom(AlignFrame alf)
 public AlignFrame newViewFrom(AlignFrame alf, String name)
 
 // load a new alignment 
+// remember to store the AlignFrame object reference 
+// if you want to manipulate the new alignment view.
 public AlignFrame loadAlignment(String text, String title)
 
 
@@ -304,6 +316,14 @@ public boolean addPdbFile(AlignFrame alFrame,
 // the given location the top left hand corner for given current view (v2.7)
 public void scrollViewToIn(AlignFrame alf, String topRow, String leftHandColumn)
 
+// adjust horizontal scroll in alf to the make 
+// the given location the left hand corner for given current view (v2.7)
+public void scrollViewToColumnIn(AlignFrame alf, String leftHandColumn)
+
+// adjust horizontal/vertical scroll in alf to the make 
+// the given location the top row for given current view (v2.7)
+public void scrollViewToRowIn(AlignFrame alf, String topRow)
+
 
 // return separator separated list of feature groups 
 // on the current alignment