JAL-2375 JAL-2376 First commit of implementation for Phyre2 result browsing, template...

[jalview.git] / examples / testdata / phyre2results / 56da5616b4559c93 / phyre2_20170104_120220.log

diff --git a/examples/testdata/phyre2results/56da5616b4559c93/phyre2_20170104_120220.log b/examples/testdata/phyre2results/56da5616b4559c93/phyre2_20170104_120220.log
new file mode 100644 (file)
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+04/01/2017 12:02:20 : INFO  : Run start: Wed Jan  4 12:02:20 GMT 2017
+04/01/2017 12:02:20 : INFO  : Initialised job
+04/01/2017 12:02:20 : INFO  : Initialised job:
+Sequence
+>FER_CAPAN_1-144
+MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGP
+IEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGW
+VLTCVAYPQSDVTIETHKEAELVG
+
+04/01/2017 12:02:20 : INFO  : Checked sequence
+04/01/2017 12:02:20 : INFO  : Finding homologues with PSI-BLAST
+04/01/2017 12:02:20 : INFO  : PSI-BLAST 3 iterations
+04/01/2017 12:03:16 : INFO  : PSI-BLAST 5 iterations
+04/01/2017 12:04:19 : INFO  : Finished PSI-BLAST
+04/01/2017 12:04:19 : INFO  : Running Buildali to generate a3m file
+04/01/2017 12:07:17 : INFO  : Converting to HMM
+04/01/2017 12:07:17 : INFO  : Calibrating HMM
+04/01/2017 12:07:22 : INFO  : Searching HMM database
+04/01/2017 12:11:50 : INFO  : Finished buildali
+04/01/2017 12:11:50 : INFO  : Predicting secondary structure
+04/01/2017 12:11:50 : INFO  : Predicted secondary structure (PSI-Pred)
+04/01/2017 12:11:50 : INFO  : Predicting Disordered regions
+04/01/2017 12:11:50 : INFO  : Predicted Disorder (Disopred)
+04/01/2017 12:11:50 : INFO  : Running memsat_svm check
+04/01/2017 12:11:50 : INFO  : Exitval for mkdir: 
+04/01/2017 12:12:30 : INFO  : Globular protein
+04/01/2017 12:12:30 : INFO  : Predicted Transmembrane (memsat_svm) ID '56da5616b4559c93'
+04/01/2017 12:12:30 : INFO  : Initialising fold library search
+04/01/2017 12:12:30 : INFO  : Initialised search input
+04/01/2017 12:12:30 : INFO  : Building Ensemble models
+04/01/2017 12:12:30 : INFO  : Building c4n58A_.1.pdb
+04/01/2017 12:12:31 : INFO  : Building d1a70a_.2.pdb
+04/01/2017 12:12:31 : INFO  : Building d1offa_.3.pdb
+04/01/2017 12:12:31 : INFO  : Building d1frra_.4.pdb
+04/01/2017 12:12:32 : INFO  : Building d1pfda_.5.pdb
+04/01/2017 12:12:32 : INFO  : Building d1frda_.6.pdb
+04/01/2017 12:12:32 : INFO  : Building d1fxia_.7.pdb
+04/01/2017 12:12:33 : INFO  : Building d1gaqb_.8.pdb
+04/01/2017 12:12:33 : INFO  : Building d1iuea_.9.pdb
+04/01/2017 12:12:34 : INFO  : Building d1awda_.10.pdb
+04/01/2017 12:12:34 : INFO  : Building d1wria_.11.pdb
+04/01/2017 12:12:34 : INFO  : Building d1czpa_.12.pdb
+04/01/2017 12:12:35 : INFO  : Building d2cjoa_.13.pdb
+04/01/2017 12:12:35 : INFO  : Building d4fxca_.14.pdb
+04/01/2017 12:12:35 : INFO  : Building c4itkA_.15.pdb
+04/01/2017 12:12:36 : INFO  : Building c1krhA_.16.pdb
+04/01/2017 12:12:36 : INFO  : Building d1krha3.17.pdb
+04/01/2017 12:12:36 : INFO  : Building d1jq4a_.18.pdb
+04/01/2017 12:12:37 : INFO  : Building c4wqmA_.19.pdb
+04/01/2017 12:12:37 : INFO  : Building c2piaA_.20.pdb
+04/01/2017 12:12:37 : INFO  : 
+04/01/2017 12:12:37 : WARN  : Set python to /bmm/www/servers/phyre2/bin//python2.7/2.7.2/bin/python2.7
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:04 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:05 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:06 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:06 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:06 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:06 : WARN  : Failed to run assembler on model
+04/01/2017 12:13:06 : INFO  : Run end  : Wed Jan  4 12:13:06 GMT 2017