--- /dev/null
+HHsearch 1.5
+NAME FER_CAPAN_1-144
+FAM
+FILE query
+COM /bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/56da5616b4559c93/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/56da5616b4559c93/query.hhm
+DATE Wed Jan 4 12:07:17 2017
+LENG 144 match states, 144 columns in multiple alignment
+FILT 145 out of 893 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
+NEFF 6.0
+EVD 0.4046 -1.4475
+SEQ
+>ss_pred
+CCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
+CCCCCCCCCCCCHHHHCCCEEEEEEEEECCCEEEEECCHHHHCC
+>ss_conf
+9213555543033544420000000345541001000135677666640899999269729999679982899999878970002337858767179941
+42115666668976834975996432450676999248454069
+>Consensus
+mxxxxaxxxxxxxxpxxxxxxxxxxxpxxxxxxxxxxxxxxxxxxxxxxxxVxxxxxxgxxxxxxxxxxtiLdaaxxaGixlxxsCrxGxCgtCxxxvxx
+GxvxxxxxxxlxxxxxxxgxvLxCxsxpxsDvxIexxxexelxx
+>FER_CAPAN_1-144
+MASVSATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAG
+GAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG
+>UniRef50_UPI0001B4503D(434-568:568) phthalate 4,5-dioxygenase n=1 Tax=Mycobacterium intracellulare ATCC 13950 RepID=UPI0001B4503D E=1e-06 s/c=0.40 id=22% cov=92%
+MADIREYLVGIGFDPALIHSELFGALPAINPGVVETGPHRPPHQPAGPPGTGPSITfaRSGLTAHWSPDYRSILGLAEACDVPTRFSCRSGVCHVCVTGV
+VAGTTTYVQRPL---EPPADGSVLICSAAPETDVVLD---------
+>UniRef50_Q4FPV2(26-128:411) Na(+)-translocating NADH-quinone reductase subunit F n=253 Tax=Bacteria RepID=NQRF_PSYA2 E=1e-07 s/c=0.56 id=21% cov=36%
+----------------------------------------------------------------------------------------GTCAQCRCRVIE
+ggGSILPTEEGYFTQGEIRNHMRLACQVAVKQDMKIEIDPE-----
+>UniRef50_A2QUP2(31-154:203) Contig An09c0210, complete genome n=28 Tax=Saccharomyceta RepID=A2QUP2_ASPNC E=0.0004 s/c=0.37 id=24% cov=60%
+--------LTSSYSTQTPRVIASSRLPINARRDFlnqqSWMARRSFSVTACAQHghitppkpgeeiNVTFIDKDGvKIELQVSEGDNLLDIAQANDIEME
+GACGGsCACSTC--------------------------------------------------
+>UniRef50_A0QWC5(215-350:351) Oxidoreductase, NAD/FAD-binding n=4 Tax=Corynebacterineae RepID=A0QWC5_MYCS2 E=1e-23 s/c=0.81 id=27% cov=92%
+MAVVRAALTEAGVPRRRIHLEVFQSLSGDPFAEDVPASGPAGPGTDAGAAEAEIELDGTVHQLRWPRDRNLVDTMLAAGVEVPYSCREGSCGSCAATVLD
+GEIERGDTPILDAQDIADGLFLACQARPVSD-------------
+>UniRef50_A6F6R9(254-372:374) Putative Oxidoreductase n=1 Tax=Moritella sp. PE36 RepID=A6F6R9_9GAMM E=7e-14 s/c=0.66 id=25% cov=66%
+--------------------------------------ASFSNVDVTAVRNVSFTTTNRNVVVSEDNQQTLLTLAEDNYVPAKYGCRIGICQECKCKKVS
+GVVYNSQTKTYSDTGEED--IQICISVPVTDVVI----------
+>UniRef50_A9EYZ0(196-330:336) Ferredoxin/Oxidoreductase FAD/NAD(P)-binding protein n=3 Tax=Rhodobacteraceae RepID=A9EYZ0_9RHOB E=2e-14 s/c=0.59 id=24% cov=83%
+-------------MPMGSDVYTCGPEPMLNAVLEAGSAMRGGTIHFERFAAVADAGTGSNGSFDieiqstgamlrVSAEESILDVLKASGIAVDFGCSEG
+LCGACLVDVLDGEVDHRDGILTPEEQATNSYLCTCVSRAKGD-------------
+>UniRef50_A9CHM3(212-349:564) Adenylate cyclase n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=A9CHM3_AGRT5 E=1e-13 s/c=0.56 id=23% cov=80%
+--------------------TRIRFITGATEAIFAGAVMLVFVLRGVRSFRQRLtaieIHYEQGVQARIPAGFSILEASRLAGIPHYSVCGGkGRCSTCR
+VKVLNSKgplppPGDIEQTTLRRIHADSDVRLGCQLRPTSDLDI----------
+>UniRef50_A4T5V2(2-99:848) Oxidoreductase FAD-binding domain protein n=1 Tax=Mycobacterium gilvum PYR-GCK RepID=A4T5V2_MYCGI E=7e-13 s/c=0.77 id=27% cov=65%
+------------------------------------------------TYSVALSFEDGVTRFiNCRPDQTVADASYRQRINIPLDCRDGACGTCKALCE
+TGSYDggTYIDDALAPDEAAAGYVLPCSMKPRSDLVLQIAATSD---
+>UniRef50_C0Z885(1-134:136) Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z885_BREBN E=2e-10 s/c=0.50 id=21% cov=64%
+-----------SLIPGRSDVQMSSPAPVPVHPQTSVKKTDRSPVRPQSEQKlVQVKQRSQTMPVRYTPSQTLLQAALTQAQPIAYKCQQGHCGKCSVQIV
+AGA------------------------------------------
+#
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+HMM A C D E F G H I K L M N P Q R S T V W Y
+ M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D
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git://source.jalview.org / jalview.git / blobdiff