JAL-653 test and testdata for importing GFF3 file with ##fasta pragma

[jalview.git] / examples / testdata / simplegff3.gff

diff --git a/examples/testdata/simplegff3.gff b/examples/testdata/simplegff3.gff
new file mode 100644 (file)
index 0000000..2ac5421
--- /dev/null
+++ b/examples/testdata/simplegff3.gff
@@ -0,0 +1,19 @@
+##gff-version 2
+##source-version exonerate:protein2genome:local 2.2.0
+##date 2015-01-16
+##type DNA
+#
+#
+# seqname source feature start end score strand frame attributes
+#
+seq1   exonerate:protein2genome:local  gene    8       11      3652    -       .       gene_id 0 ; sequence seq2 ; gene_orientation .
+seq1   exonerate:protein2genome:local  cds     9       11      .       -       .       
+seq1   exonerate:protein2genome:local  exon    9       11      .       -       .       insertions 3 ; deletions 6
+seq1   exonerate:protein2genome:local  similarity      8       11      3652    -       .       alignment_id 0 ; Query seq2 ; Align 11 1 3
+##FASTA
+>seq1
+ACTACGACACGACGACGACGACG
+>seq2
+CDEQEATGTQDAQEQAQC
+
+