--- /dev/null
+>FER_CAPAA/1-97 Ferredoxin
+>FER_CAPAN/1-144 Ferredoxin, chloroplast precursor
+>FER1_SOLLC/1-144 Ferredoxin-1, chloroplast precursor
+>Q93XJ9_SOLTU/1-144 Ferredoxin I precursor
+>FER1_PEA/1-149 Ferredoxin-1, chloroplast precursor
+>Q7XA98_TRIPR/1-152 Ferredoxin I
+>FER1_MESCR/1-148 Ferredoxin-1, chloroplast precursor
+>FER1_SPIOL/1-147 Ferredoxin-1, chloroplast precursor
+>FER3_RAPSA/1-96 Ferredoxin, leaf L-A
+>FER1_ARATH/1-148 Ferredoxin-1, chloroplast precursor
+>FER_BRANA/1-96 Ferredoxin
+>FER2_ARATH/1-148 Ferredoxin-2, chloroplast precursor
+>Q93Z60_ARATH/1-118 At1g10960/T19D16_12
+>FER1_MAIZE/1-150 Ferredoxin-1, chloroplast precursor
+>O80429_MAIZE/1-140 Ferredoxin
+>1A70|/1-97
+* iteration 1
+-MMMMMMM-M-MMMM-
+-AAAAAAA-A-AAAA-
+----TTAA-S-SSTA-
+----TTTT-T-TTVT-
+-------------L--
+-------------G--
+------TT-----S--
+----PPAT-----P--
+-SSSAAAT-A-AAR--
+-VIILLLM-L-LLA--
+-SSSYYSM-S-SSP--
+-AGGGGGG-S-SSA--
+-TTTTTA--A-AAF--
+-MMMAAT--I-IIFA-
+-IIIVVMM-V-VVFL-
+-SSSSSSA-G-SSSS-
+-TTTTTTT-T-TTSM-
+-SSSSSAT-S-SSSS-
+-FFFFFFF-F-FFSI-
+-MLLLMAV-I-LLLL-
+-PPPRRPP-R-RRRR-
+-RRRTRKK-R-RRA--
+-KKKQQ-P-S-QQA--
+-PPPPP-Q-P-QQP--
+-AAVMVTA-A-TTAA-
+-VVVPPPP-P-PPPP-
+-TTTMMPP-I-IITP-
+-SSSSSMM-S-SSAP-
+-LLLVVTM-L-LLVC-
+------AA-R-RR-F-
+-KKKTAAA-S-SS-S-
+-PAATTLL-L-LLAS-
+-IIITTPP-P-PPLP-
+-PSSKTTS-S-FFPL-
+-NNNATNN-A-AAAR-
+-VVVFTVT-N-NNAL-
+-GGGSKGG-T-TTKR-
+-EEENARR-Q-QQVV-
+-----F----------
+-----P----------
+-AAAGSAS-S-SSGA-
+-LLLFGLL-L-LLIV-
+-FFFLFFF-F-FFMA-
+-GGGGGGG-G-GGGK-
+-LLLLLLL-L-LLRP-
+-KKKKKKK-K-KKSL-
+-SSSTSST-S-SSAA-
+-----V----------
+-AGGSSSG-G-SSSA-
+----LTAS-T-TTSP-
+----KKSR-A-AARM-
+-NRRRRR--R-RRRR-
+-GNNGG---G-GG-R-
+-GGGDDGG-G-GG-Q-
+-KRRLLRG-R-RRRL-
+-VIIAAVR-V-VVLL-
+-TTTVVTM-T-TTRR-
+-CCCAAAT-A-AAAA-
+-MMMMMMM-M-MMQQ-
+AAAAAAAAAAAAAAAA
+SSSSSTAATTTTTTTA
+YYYYYYYYYYYYYYYY
+KKKKKKKKKKKKKNNK
+VVVVVVVVVVVVVVVV
+KKKKKKTTKKKKKKKT
+LLLLLLLLFFFFFLLL
+IIIIVIVVIIIIIIIV
+TTTTTTTTTTTTTTTT
+PPPPPPPPPPPPPPPP
+DDEDDEETEEEEEEET
+GGGGGGGGGGGGGGGG
+PPPPTPKNEEEEEEEN
+IIIIQQQVQLQQQVVV
+EEEEEEEEEEEEEEEE
+FFFFFFLFVVVVVLLF
+DDEEEDEQEEEEEQQQ
+CCCCCCCCCCCCCVVC
+PPPPPPPPDDDEEPPP
+DDDDSDDDDDDEEDDD
+DNDDDDDDDDDDDDDD
+VVVVVVVVVVVVVVVV
+YYYYYYYYYYYYYYYY
+IIIIIIIIVVVVVIII
+LLLLLLLLLLLLLLLL
+DDDDDDDDDDDDDDDD
+QQQQHHAAAAAAAQFA
+AAAAAAAAAAAAAAAA
+EEEEEEEEEEEEEEEE
+EEEEEEEEEEEEEEEE
+AAEEVVAEAAAAADEE
+GGGGGGGGGGGGGGGG
+HHHHIIIIIIILLIII
+DDDDDEDDDDDDDDDD
+LLLLLLLLLLLLLLLL
+PPPPPPPPPPPPPPPP
+YYYYYYYYYYYYYYFY
+SSSSSSSSSSSSSSSS
+CCCCCCCCCCCCCCCC
+RRRRRRRRRRRRRRRR
+AAAAAAAAAAAAAAAA
+GGGGGGGGGGGGGGGG
+SSSSSSSSSSSSSSSS
+CCCCCCCCCCCCCCCC
+SSSSSSSSSSSSSSSS
+SSSSSSSSSSSSSSSS
+CCCCCCCCCCCCCCCC
+AAAAAAAAAAAAAAAA
+GGGGGGGGGGGGGGGG
+KKKKKKKKKKKKKKKK
+IIVVVVVLVVVVVVVL
+AATTVVTKVVVVVVVK
+GGAAGNSTSSSSSSST
+GGGGGGGGGGGGGGGG
+AASTENSSSSFSSSSS
+VVVVVVVLVVVIIVVL
+DDDDDNNNDDDDDDDN
+QQQQQQQQQQQQQQQQ
+TTSSSEDDSSSSSSSD
+DDDDDDDDDDDDDDDD
+GGGGGGGQQQEQQQQQ
+NNNKSSSSSSSSSSSS
+FFFFFFFFFFFFFYFF
+LLLLLLLLLLLLLLLL
+DDDDDDDDDDDDDDND
+DDEDDDDDDDDDDDDD
+DDDDEEDDDEDE-GND
+QQQQQQQQQQQQ-QQQ
+LLEEIIIIIIIM-IVI
+EEAAEEKDAGAS-AAD
+EEAAAGEEEEEE-DDE
+GGGGGGGGGGGG-GGG
+WWFFFWWWFFFY-WWW
+VVVVVVVVVVVV-VVV
+LLLLLLLLLLLL-LLL
+TTTTTTTTTTTT-TTT
+CCCCCCCCCCCC-CCC
+VVVVVVVAAAAV-HAA
+AAAAAAAAAAAA-AAA
+YYYYYFYYYYYY-YYY
+PPPPPPPPPPPP-PPP
+QQKKTTTVTTTT-TTV
+SSGCSSGSSSSS-SSS
+DDDDDDDDDDDD-DDD
+VVVVVVVVVVVV-VVV
+TTTTVTTTTTTV-VVT
+IIIIIIIIIIII-III
+EEEEEEEEEEEE-EEE
+TTTTTTTTTTTT-TTT
+HHHHHHHHHHHH-HHH
+KKKKKKKKRKKK-KKK
+EEEEEEEEEEEE-EEK
+AAEEEEEEEEEE-EDE
+EEEEDEEEDDEA-EDE
+LLLLLLLLMILI-LLL
+VVTTTTTTVVVM-TLT
+GGAAAAAA-----G-A
+-------------A--
+*
git://source.jalview.org / jalview.git / blobdiff