--- /dev/null
+#Comment lines follow the hash symbol
+JALVIEW_ANNOTATION
+SEQUENCE_REF FER1_MESCR 5
+BAR_GRAPH Bar Graph 1 <html>an <em>html tooltip</em> for Bar graph 1.</html> ||-100,-|-200,-|-300,-|-400,-|200,+|300,+|150,+
+LINE_GRAPH Green Values 1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2|2.1|-1.1|3.2
+LINE_GRAPH Red Values 2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2|-1.1|1.1|3.2
+LINE_GRAPH Blue Values 0|0|0|1.1|2.2|1.3|3.4|0.7|1.4|3.3|2.2
+LINE_GRAPH Yellow Values 3.0|3.0|3.0|2.1|3.2|1.3|-1.4|5.5|1.4|1.3|4.2
+
+BAR_GRAPH Bar Graph 2 1,.|2,*|3,:|4,.|5,*|4,:|3,.|2|1|1|2|3|4|5|4
+
+NO_GRAPH Icons ||||E,Sheet1|E|E||||H,Sheet 2|H|H|H||||||
+NO_GRAPH Purple Letters m|y|p|r|o|t|e|i|n
+COLOUR Bar Graph 2 blue
+COLOUR Red Values 255,0,0
+COLOUR Green Values green
+COLOUR Blue Values blue
+COLOUR Yellow Values yellow
+COLOUR Purple Letters 151,52,228
+
+COMBINE Green Values Red Values
+COMBINE Blue Values Yellow Values
+
+GRAPHLINE Red Values 2.6 threshold black
+
+SEQUENCE_GROUP Group_A 30 50 *
+SEQUENCE_GROUP Group_B 1 351 2-5
+SEQUENCE_GROUP Group_C 12 14 -1 seq1 seq2 seq3
+PROPERTIES Group_A description=This is the description colour=Helix Propensity pidThreshold=0 outlineColour=red displayBoxes=true displayText=false colourText=false textCol1=black textCol2=black textColThreshold=0
+PROPERTIES Group_B outlineColour=red
+PROPERTIES Group_C colour=Clustal