+++ /dev/null
-<script src="javascript/deployJava.js"></script>
-<script src="jmol/Jmol.js"></script>
-<script src="javascript/jquery-1.4.4.min.js"></script>
-<script src="javascript/jquery.timer.js"></script>
-<script src="javascript/jquery.blockUI.js"></script>
-<script src="javascript/jshashtable-2.1.js" language="javascript"></script>
-<!-- <script src="archive-min.js" language="javascript"></script>
--->
-<script src="javascript/jalview.js" language="javascript"></script>
-<script language="JavaScript">
-// instead of this, we use a custom JmolApplet spec
-// jmolInitialize('jmol');
-jmolInitialize("","${content.jmol}");
-function genHref()
-{
- var s1 = "ml:i@midd..", s2 = "atelcpoueau", s3 = "iomyob.neck", href="";
- for(i=0; i<11; i++)
- { href = href + s1.charAt(i) + s2.charAt(i) + s3.charAt(i);
- }
- window.location=href;
-}
-</script>
-<script>
- var loglevel=1;
- function dbg(lvl,string) {
- if (_console && lvl<=loglevel) {_console.value += string + "\n";}
- }
- var _lastTime=new Date();
- var _path;
- var _datazip;
- var _zip;
- var alignA;
- var alignB;
- var featuresA;
- var featuresB;
- var pairs;
- var atompairs;
- var structdata;
- var jmolview;
- var jvstructassoc;
- var modeltofiles = new Array();
-
- function lJvA() {
- jvfollower = document.getElementById("jvA");
- setConsole(document.getElementById("stdout"));
-
- sep = jvfollower.getSeparator();
- //jvapp.setSeparator(""+jvapp.getSeparator());
- linkJvJmol(jvfollower, "jmolView", modeltofiles);
- };
-
- var _jvA=new Object();
- _jvA.attributes = {
- code : 'jalview.bin.JalviewLite',
- archive : '${content.jvl}',
- width : '500',
- height : '350',
- mayscript : 'True',
- scriptable: 'True',
- id : 'jvA'
- };
- _jvA.parameters = {
- java_arguments : "-Xmx256m",
- externalstructureviewer : "true",
- oninit : "lJvA",
- automaticScrolling : "true",
-// <!-- defaultColour : "Strand Propensity", -->
- file : "uniref50_mz.fa",
-
- relaxedidmatch : "true",
- debug : "true",
- wrap : "false",
- // separator : "^",
- showAnnotation : "false",
- embedded : "true",
- showFullId : "false",
- RGB : "F2F2FF",
- linkLabel_1 : "EMBL-EBI Search",
- linkUrl_1 : "http://www.ebi.ac.uk/ebisearch/search.ebi?db=allebi&query=$SEQUENCE_ID$"
- ,
- linkLabel_2 : "Uniprot"
- ,
- linkUrl_2 : "http://www.uniprot.org/uniprot/$SEQUENCE_ID$",
- APPLICATION_URL : "http://www.jalview.org/services/launchApp",
- PDBfile : "1gaq.txt FER1_MAIZE",
- permissions : "sandbox"
- };
- jmolSetCallback("hoverCallback","_jmolhover");
- jmolSetCallback("pickCallback","_jmolpick");
- modeltofiles+="1gaq.txt";
-</script>