Merge branch 'develop' into alpha/JAL-3362_Jalview_212_alpha

[jalview.git] / help / help / helpTOC.xml

diff --git a/help/help/helpTOC.xml b/help/help/helpTOC.xml
index 7e358d6..4c372e0 100755 (executable)
--- a/help/help/helpTOC.xml
+++ b/help/help/helpTOC.xml
@@ -24,7 +24,8 @@
        <tocitem text="Jalview Documentation" target="home" expand="true">
                        <tocitem text="What's new" target="new" expand="true">
                                <tocitem text="Latest Release Notes" target="release"/>
-                               <tocitem text="VCF Import" target="importvcf"/>
+        <tocitem text="Virtual Features in CDS/Protein Views" target="splitframe.virtualfeats"/>
+                               <tocitem text="VCF Variant Attributes" target="importvcf.attribs"/>
                                <tocitem text="Feature Filters and Attribute Colourschemes" target="features.featureschemes" />
                                
                </tocitem>
@@ -62,6 +63,7 @@
                        <tocitem text="Feature Colourschemes" target="features.featureschemes" />
                        <tocitem text="User Defined Sequence Features" target="seqfeatcreat" />
                        <tocitem text="Editing Sequence Features" target="seqfeatedit" />
+                       <tocitem text="HTML Feature Attributes report" target="seqfeatures.report" />
                        <tocitem text="HTML annotation report" target="io.seqreport" />
                </tocitem>
                
@@ -149,6 +151,7 @@
                                <tocitem text="Colour Menu" target="alwColour" />
                                <tocitem text="Calculate Menu" target="alwCalc" />
                                <tocitem text="Web Service Menu" target="wsMenu" />
+                               <tocitem text="HMMER Menu" target="alwHmmer" />
                                <tocitem text="Annotation Panel Menu" target="annotPanelMenu" />
                                <tocitem text="Popup Menu" target="popMenu" />
                        </tocitem>