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JAL-3224 JAL-3225 Fixed help image mangling, moved help to help/help and added this...
[jalview.git] / help / help / html / colourSchemes / hydrophobic.html
diff --git a/help/help/html/colourSchemes/hydrophobic.html b/help/help/html/colourSchemes/hydrophobic.html
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+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+<head>
+<title>Hydrophobic Colour Scheme</title>
+<style type="text/css">
+<!--
+td {
+       text-align: center;
+}
+-->
+</style>
+</head>
+
+<body>
+  <p>
+    <strong>Hydrophobicity</strong>
+  </p>
+  <p>According to the hydrophobicity table of Kyte, J., and
+    Doolittle, R.F., J. Mol. Biol. 1157, 105-132, 1982. The most
+    hydrophobic residues according to this table are coloured red and
+    the most hydrophilic ones are coloured blue.</p>
+  <div align="center">
+    <table width="400" border="1">
+      <tr>
+        <td bgcolor="#ff0000">I</td>
+        <td bgcolor="#f60009">V</td>
+        <td bgcolor="#ea0015">L</td>
+        <td bgcolor="#cb0034">F</td>
+        <td bgcolor="#c2003d">C</td>
+      </tr>
+      <tr>
+        <td bgcolor="#b0004f">M</td>
+        <td bgcolor="#ad0052">A</td>
+        <td bgcolor="#6a0095">G</td>
+        <td bgcolor="#680097">X</td>
+        <td bgcolor="#61009e">T</td>
+      </tr>
+      <tr>
+        <td bgcolor="#5e00a1">S</td>
+        <td bgcolor="#5b00a4">W</td>
+        <td bgcolor="#4f00b0">Y</td>
+        <td bgcolor="#4600b9">P</td>
+        <td bgcolor="#1500ea">H</td>
+      </tr>
+      <tr>
+        <td bgcolor="#0c00f3">E</td>
+        <td bgcolor="#0c00f3">Z</td>
+        <td bgcolor="#0c00f3">Q</td>
+        <td bgcolor="#0c00f3">D</td>
+        <td bgcolor="#0c00f3">B</td>
+      </tr>
+      <tr>
+        </td>
+        <td bgcolor="#0c00f3">N</td>
+        <td bgcolor="#0000ff">K</td>
+        <td bgcolor="#0000ff">R</td>
+      </tr>
+    </table>
+  </div>
+</body>
+</html>