JAL-629 Changed some old -arg to --arg in help docs, and some other mailing list...

[jalview.git] / help / help / html / features / annotationsFormat.html

diff --git a/help/help/html/features/annotationsFormat.html b/help/help/html/features/annotationsFormat.html
index fcdb908..71f3046 100755 (executable)
--- a/help/help/html/features/annotationsFormat.html
+++ b/help/help/html/features/annotationsFormat.html
@@ -40,7 +40,7 @@
     annotations files are imported into Jalview in the following ways:<br />
   <ul>
     <li>from the command line<strong><pre>
- -annotations &lt;<em>Annotations filename</em>&gt;</pre></strong></li>
+ --annotations &lt;<em>Annotations filename</em>&gt;</pre></strong></li>
     <li>Dragging an annotations file onto an alignment window</li>
     <li>Via the &quot;Load Features / Annotations&quot; entry in
       the <strong>File</strong> menu of an alignment window.
@@ -189,6 +189,7 @@ GRAPHLINE&#9;<em>graph_name</em>&#9;<em>value</em>&#9;<em>label</em>&#9;<em>colo
         available in Jalview applet due to AWT 1.1 limitations</em>)</li>
   </ul>
   </p>
+  <hr />
   <p>
     <strong><a name="groupdefs">SEQUENCE_GROUP</a></strong><br />
     Groups of sequences and column ranges can be defined using a tab
@@ -199,7 +200,8 @@ GRAPHLINE&#9;<em>graph_name</em>&#9;<em>value</em>&#9;<em>label</em>&#9;<em>colo
   <p>The sequences can be defined by alignment index and a range of
     sequences can be defined in a comma delimited field such as</p>
   <p>2-5,8-15,20,22</p>
-  <p>Enter * to select all groups.</p>
+  <p>Enter * to select all sequences.</p>
+  <p>Set both <em>Group_Start</em> and <em>Group_End</em> to * to include the full sequence(s) range.
   <p>
     <strong>Note:</strong> If the alignment indices are not known, enter
     -1, followed by a tab and then a tab delimited list of sequence IDs.