JAL-629 Updated help docs and fixed structure image subvalues

[jalview.git] / help / help / html / features / clarguments-advanced.html

diff --git a/help/help/html/features/clarguments-advanced.html b/help/help/html/features/clarguments-advanced.html
index db818d8..a235727 100644 (file)
--- a/help/help/html/features/clarguments-advanced.html
+++ b/help/help/html/features/clarguments-advanced.html
@@ -25,15 +25,15 @@
   <h1>Command Line: advanced usage</h1>
 
   <p>
-  <a href="clarguments.html">Command Line: summary</a>
-  <br/>
-  <a href="clarguments-intro.html">Command Line: introduction</a>
+  <a href="clarguments.html">Command Line: introduction</a>
   <br/>
   <a href="clarguments-basic.html">Command Line: basic usage</a>
   <br/>
   Command Line: advanced usage
   <br/>
   <a href="clarguments-argfiles.html">Command Line: argument files</a>
+  <br/>
+  <a href="clarguments-reference.html">Command Line: reference</a>
   </p>
 
   <hr/>
@@ -176,8 +176,7 @@
   <hr/>
   Continue to <a href="clarguments-argfiles.html">Command Line: argument files</a>.
   <br/>
-  Return to <a href="clarguments.html">Command Line: summary</a>.
-
+  <a href="clarguments-reference.html">Command Line: reference</a>
 
 </body>
 </html>