Merge branch 'develop' into improvement/JAL-4124_dont_duplacate_PAE_data_acrossviews

[jalview.git] / help / help / html / features / clarguments-argfiles.html

diff --git a/help/help/html/features/clarguments-argfiles.html b/help/help/html/features/clarguments-argfiles.html
index 5c71d16..ad27751 100644 (file)
--- a/help/help/html/features/clarguments-argfiles.html
+++ b/help/help/html/features/clarguments-argfiles.html
@@ -86,7 +86,7 @@
   </p>
 
   <p>
-  Because <code>--argfiles</code> takes a filename argument, and multiple <code>--argfiles</code> can be read on the command line, you can also use file globs to specify multiple <code>--argfile</code> values.  If you produce an argument file for each set of alignment files that you wish to associate then you can act on all of them with, e.g.
+  Because <code>&#8209;&#8209;argfiles</code> takes a filename argument, and multiple <code>&#8209;&#8209;argfiles</code> can be read on the command line, you can also use file globs to specify multiple <code>&#8209;&#8209;argfile</code> values.  If you produce an argument file for each set of alignment files that you wish to associate then you can act on all of them with, e.g.
   <pre>
   jalview --argfile=*/argfile.txt --headless
   </pre>
@@ -124,7 +124,7 @@
   <h2><a name="onlyargumentfiles"></a>Only argument files</h2>
 
   <p>
-  When you use an <code>--argfile</code> argument, all other non-initialising arguments on the command line <em>will be ignored</em>.  Only the initialising arguments and any and all <code>--argfiles</code> arguments on the command line will be used.  You can also set initialising arguments in argument files.
+  When you use an <code>&#8209;&#8209;argfile</code> argument, all other non-initialising arguments on the command line <em>will be ignored</em>.  Only the initialising arguments and any and all <code>&#8209;&#8209;argfiles</code> arguments on the command line will be used.  You can also set initialising arguments in argument files.
   </p>