<title>Jalview Command Line Arguments (next generation)</title>
<body>
- <h1>Jalview Command Line Arguments (version 2.11.3.0 and later)</h1>
+ <h1>Jalview Command Line Arguments (next generation)</h1>
<p>
For a summary of Jalview command line arguments see <a href="clarguments-ng-summary.html">Summary
<p>
The old command line arguments can still be used (see
<a href="clarguments.html">the old page on command line arguments</a>) so
- existing scripts utilising them should not break.
+ existing scripts utilising them should not break. <strong>These will be removed</strong> in a future version of Jalview.
</p>
<p>
<strong>Note!</strong> If you use command line arguments without any dashes and
<em>don't</em> use the bare-word argument <code>open</code> then all
your arguments will be interpreted as alignment files to be opened by the
- new command line argument process.
+ new command line argument process!
</p>
<p>