JAL-3608 added to LaF documentation

[jalview.git] / help / help / html / features / commandline.html

diff --git a/help/help/html/features/commandline.html b/help/help/html/features/commandline.html
index f0e04d5..ac462e0 100644 (file)
--- a/help/help/html/features/commandline.html
+++ b/help/help/html/features/commandline.html
@@ -38,7 +38,7 @@
 
   <ul>
     <li>Standard installation on Linux/Unix:<pre>
-       /PATH_TO_JALVIEW/Jalview -open http://www.jalview.org/examples/jpred_msa.fasta -annotations http://www.jalview.org/examples/jpred_msa.seq.concise -colour Clustal</pre>
+       /PATH_TO_JALVIEW/Jalview -open https://www.jalview.org/examples/jpred_msa.fasta -annotations https://www.jalview.org/examples/jpred_msa.seq.concise -colour Clustal</pre>
     </li>
     <li>Standard installation on Windows:<pre>
       \PATH_TO_JALVIEW\Jalview.exe -open %HOMEPATH%\myalignment.fa</pre>
@@ -85,10 +85,13 @@ open /Applications/Jalview.app --args -open ~/myalignment.fa</pre><em>(put
     <li>-Dlaf=nimbus (Java's alternative Nimbus Look and Feel)</li>
     <li>-Dlaf=mac (only has an effect on OSX)</li>
     <li>-Dlaf=gtk (only has an effect on Linux)</li>
+    <li>-Dlaf=metal (force Java's Metal Look and Feel, default on linux)</li>
+    <li>-Dlaf=quaqua (macOS only. Force attempt at old macOS theme)</li>
+    <li>-Dlaf=vaqua (macOS only. Force attempt at modern macOS theme)</li>
   </ul>
   The currently configured look and feel is logged to Jalview's console.
   Once the look and feel has been changed, it will be stored in
-  Jalview's .jalview_properties file for future Jalview sessions.
+  Jalview's .jalview_properties file for future Jalview sessions.  This property is <strong>PREFERRED_LAF</strong> and can also be used to set the Look and feel by editing your .jalview_properties file.
 
   <p>&nbsp;</p>
   <p>&nbsp;</p>