JAL-4090 JAL-3855 updated figure and doc.. a little

[jalview.git] / help / help / html / features / paematrices.html

diff --git a/help/help/html/features/paematrices.html b/help/help/html/features/paematrices.html
index d229251..8d180ee 100644 (file)
--- a/help/help/html/features/paematrices.html
+++ b/help/help/html/features/paematrices.html
@@ -43,6 +43,10 @@
                        href="https://alphafold.ebi.ac.uk/entry/O04090">O04090 3D model</a>
                at EBI-AlphaFoldDB).
        </p>
+       <div style="display:flex; flex-wrap:wrap;"align="center" width="100%">
+       <figure><img src="../structures/epas1_annotdetail.png" height="300"/><figcaption>Alignment of EPAS1 homologs from Human, Rat and Cow, with predicted alignment error shown in Jalview</figcaption></figure>
+       <figure><img src="../structures/epas1_pae_ebiaf.png" height="300"/><figcaption>Predicted Alignment Error Matrix<br/>from <a href="https://alphafold.ebi.ac.uk/entry/Q99814">https://alphafold.ebi.ac.uk/entry/Q99814</a></figcaption></figure>
+       </div>
        <p>
                <strong>Importing PAE Matrices</strong>
        </p>
@@ -52,10 +56,11 @@
                        href="../features/structurechooser.html">Jalview's structure
                        chooser</a> GUI. If you have produced your own models and accompanying
                PAE matrices using a pipeline such as ColabFold, then you can load
-               them both together via the <a
-                       href="../features/structurechooser.html#loadpdbfile">Load PDB
-                       File</a> dropdown menu in the 3D structure chooser. in a <a
-                       href="../io/paematrixformat.html">supported PAE format</a>.
+               them both together via the
+               <a href="../features/structurechooser.html#loadpdbfile">Load PDB
+                       File</a> dropdown menu in the 3D structure chooser, providing it is
+               in a
+               <a href="../io/paematrixformat.html">supported PAE format</a>.
        </p>
        <p>
                The <a href="../features/clarguments-basic.html">Command Line