JAL-4061 JAL-4062 update find box image and docs in help

[jalview.git] / help / help / html / features / search.html

diff --git a/help/help/html/features/search.html b/help/help/html/features/search.html
index d559db8..6889d84 100755 (executable)
--- a/help/help/html/features/search.html
+++ b/help/help/html/features/search.html
@@ -36,7 +36,7 @@ td {
   </p>
   <p>The search box is displayed by pressing Control and F or
     selecting &quot;Find...&quot; from the &quot;Search&quot; menu.</p>
-  <img src="search.png" width="400" height="152">
+  <img src="search.png"  height="152">
   <p>&quot;Find next&quot; will find the next occurrence of the
     query and adjust the alignment window view to show it, and
     &quot;Find all&quot; highlights all matches for a query. The
@@ -46,18 +46,24 @@ td {
   <ul>
     <li>The search uses regular expressions. (understands a mixture
       of posix and perl style regex - see below for a summary)</li>
-    <li>Gaps are ignored when matching the query to the sequences
-      in the alignment.</li>
-    <li>Hidden columns can optionally be ignored (<em>since Jalview 2.11</em>)</li>
-    <li>The search is applied to both sequences and their IDs. It can
-      optionally also be applied to the description string (<em>since Jalview
-        2.10</em>), and sequence feature descriptions (<em>since Jalview 2.11.2.5</em>).
-    </li>
-    <li>If a region is selected, then search will <strong>only</strong>
+               <li>If a region is selected, then search will <strong>only</strong>
       be performed on that region.<br />
     <em>Tip: to quickly clear the current selection, click the
         alignment view you wish to search, then press 'Escape'.</em>
     </li>
+    <li>Gaps are ignored when matching the query to the sequences
+      in the alignment.</li>
+    <li>Hidden columns can optionally be ignored (<em>since Jalview 2.11</em>)</li>
+               <li>The search is applied to both sequences and their IDs. <br />
+                       Check boxes also enable searching of:
+                       <ul>
+                               <li><strong>Sequence description</strong> (<em>since Jalview 2.10</em>)
+                               </li>
+                               <li><strong>Sequence Feature</strong> type and description for currently displayed features (<em>since Jalview
+                                               2.11.3.0</em>)
+                               </li>
+                       </ul>
+               </li>
     <li>Tick the &quot;Match Case&quot; box to perform a case
       sensitive search.</li>
     <li>To access a <a href="#queryhistory">previously used
@@ -87,9 +93,11 @@ td {
   <strong>Copying highlighted regions to a new alignment</strong>
   </p>
   <p>
-    You can copy the currently highlighted matching regions of sequences to the clipboard with alt-Command-C.    
+       Press <strong>Copy</strong> button or type Ctrl (Cmd on OSX) + Shift +
+       C to copy highlighted search results to the clipboard, enabling them
+       to be pasted to a new alignment (via Shift+Ctrl (or Cmd) + V).
   </p>
-  <p>
+       <p>
 
     <strong>A quick Regular Expression Guide</strong>
   </p>