--- /dev/null
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+<head>
+<title>Viewing and exporting sequence annotation reports</title>
+</head>
+<body>
+ <p>
+ <strong>Viewing and exporting sequence annotation reports</strong> <br />
+ Much of the information retrieved by Jalview about a sequence is
+ visualized on the alignment. Often, however, there are a huge number
+ of ontology terms, cross-references, links to publications and other
+ kinds of data associated with a sequence, and only some of these are shown in
+ sequence ID tooltip. To show the full set of annotation and database links for
+ a sequence, right-click and select the
+ <strong>"<em>(sequence's name)</em></em>→Sequence
+ Details ..."
+ </strong> entry from the <a href="../menus/popupMenu.html">pop-up menu</a>.
+ </p>
+ <p>
+ <strong>Annotation Reports for a range of sequences</strong><br />
+ If you would like to view database and metadata for a number of sequences,
+ simply select them all and then use the <strong>Selection→Sequence
+ Details ...</strong> entry in the <a href="../menus/popupMenu.html">pop-up
+ menu</a>.
+ </p>
+ <img src="seqreport.gif"
+ alt="Sequence Annotation is displayed as HTML in a report window" />
+ <p>
+ <strong>Copying and pasting annotation to other programs</strong><br>
+ The <strong>File→Save</strong> option in the sequence
+ annotation report window allows the report to be saved as HTML,
+ which will preserve links and any other metadata. It is also
+ possible to copy and paste the text to other programs, but in some
+ cases, the HTML will not be preserved. In that case, you can toggle
+ the display of HTML source code with the <strong>Edit→Show
+ HTML Source</strong> drop down menu entry.
+ </p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff