Merge branch 'feature/JAL-3187linkedFeatures' into feature/JAL-3251biotypedMappings

[jalview.git] / help / help / html / menus / alwcalculate.html

diff --git a/help/html/menus/alwcalculate.html b/help/help/html/menus/alwcalculate.html
similarity index 92%
rename from help/html/menus/alwcalculate.html
rename to help/help/html/menus/alwcalculate.html
index c7a1c87..d08f713 100755 (executable)
--- a/help/html/menus/alwcalculate.html
+++ b/help/help/html/menus/alwcalculate.html
@@ -73,15 +73,17 @@
         parsed into sequence associated annotation which can then be
         used to sort the alignment via the Sort by→Score menu.
     </em> <br></li>
-    <li><strong>Translate as cDNA</strong> (not applet)<br> <em>This
+    <li><strong>Translate as cDNA</strong><br> <em>This
         option is visible for nucleotide alignments. Selecting this
         option shows the DNA's calculated protein product in a new <a
         href="../features/splitView.html">split frame</a> window. Note
         that the translation is not frame- or intron-aware; it simply
-        translates all codons in each sequence, using the standard <a
-        href="../misc/geneticCode.html">genetic code</a> (any incomplete
-        final codon is discarded). You can perform this action on the
-        whole alignment, or selected rows, columns, or regions.
+        translates all codons in each sequence. You can use the standard <a
+        href="../misc/geneticCode.html">genetic code</a>, or choose an 
+        alternative code table (any incomplete final codon is discarded). 
+        You can perform this action on the whole alignment, or selected 
+        rows, columns, or regions. Alternative code tables were added in
+        Jalview 2.11.
     </em> <br></li>
     <li><strong>Reverse, Reverse Complement</strong> (not applet)<br>
       <em>These options are visible for nucleotide alignments.