JAL-3746 more release notes and docs: JAL-3863 JAL-3745

[jalview.git] / help / help / html / releases.html

diff --git a/help/help/html/releases.html b/help/help/html/releases.html
index 353dd46..a8d346b 100755 (executable)
--- a/help/help/html/releases.html
+++ b/help/help/html/releases.html
@@ -52,15 +52,101 @@ li:before {
   </p>
   <table border="1">
     <tr>
-      <th nowrap><em>Release</em></th>
+      <th nowrap><a id="Jalview.$$Version-Rel$$"><em>Release</em></th>
       <th><em>New Features</em></th>
       <th><em>Issues Resolved</em></th>
     </tr>
     <tr>
       <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.2">2.11.2</a><a id="Jalview.2.11.2.0">.0</a><br />
+          <em>24/02/2022</em></strong></td>
+      <td align="left" valign="top">
+        <ul>
+          <li>
+            <!-- JAL- -->
+          </li>
+          <li>
+            <!-- JAL-3863 -->Support for Canonical Uniprot IDs
+          </li>
+        </ul> <em>JalviewJS</em>
+        <ul><li><!-- 3624 -->PDB structures mapped to Uniprot Sequences with SIFTS</li>
+        <li></li> 
+        </ul> <em>Development</em>
+        <ul>
+          <li>Updated building instructions</li>
+          <li>First integrated JalviewJS and Jalview release</li>
+        </ul>
+
+      </td>
+      <td>
+        <ul>
+          <li>
+            <!-- JAL-3700,JAL-3751,JAL-3763, JAL-3725 -->Selections not propagated between Linked CDS - Protein alignments and their trees (known defect from 2.11.1.3) 
+          </li>
+          <li>
+            <!-- JAL-3761  -->Not all codon positions highlighted for
+            overlapping exon splice sites (e.g due to RNA slippage)
+          </li>
+          <li>
+            <!-- JAL-3915 -->Removed RNAview checkbox and logic from
+            Structure Preferences
+          </li>
+          <li><!--  JAL-3583 -->Tooltip behaviour improved (slightly)</li>
+          <li><!-- JAL-3162 -->Can edit a feature so that start &gt; end</li>
+          <li><!-- JAL-2848 -->Cancel from Amend Features doesn't reset a modified graduated colour</li>
+        </ul> <em>Development</em>
+        <ul>
+          <li>Gradle<ul><li>Fixed non-fatal gradle errors during build</li>
+          <li><!--  JAL-3745 -->Updated build.gradle for use with Gradle v.6.6+</li></ul></li>
+           
+        </ul>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.7">.7</a><br />
+          <em>18/01/2022</em></strong></td>
+      <td></td>
+      <td align="left" valign="top">
+        <ul>
+          <li>
+            <!-- JAL-3703, JAL-3935 -->Files open in Jalview cannot be
+            updated by Jalview or other applications (Windows, other non
+            Unix/BSD OSs)
+          </li>
+        </ul> <em>Security</em>
+        <ul>
+          <li>
+            <!-- JAL-3937 -->Enable AIA download of HTTPS intermediate
+            certificates.
+          </li>
+        </ul>
+    </tr>
+    <tr>
+      <td width="60" align="center" nowrap><strong><a
+          id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.6">.6</a><br />
+          <em>6/01/2022</em></strong></td>
+
+      <td align="left" valign="top"><em>Security</em>
+        <ul>
+          <li>
+            <!-- JAL-3934 -->Version bump library dependency: Log4j 2.16.0 to 2.17.0.
+            </li>
+        </ul></td>
+      <td>
+      </td>
+    </tr>
+    <tr>
+      <td width="60" align="center" nowrap><strong><a
           id="Jalview.2.11.1">2.11.1</a><a id="Jalview.2.11.1.5">.5</a><br />
-          <em>22/06/2021</em></strong></td>
-      <td align="left" valign="top"><em>Development</em>
+          <em>20/12/2021</em></strong></td>
+
+      <td align="left" valign="top"><em>Security</em>
+        <ul>
+          <li>
+            <!-- JAL-3933 -->Update library dependency: Log4j 2.16.0
+            (was log4j 1.2.x).
+        </ul> <em>Development</em>
         <ul>
           <li>Updated building instructions</li>
         </ul></td>