</head>
<body>
<p>
+ <strong>Jalview 2.11.1</strong>
+ </p>
+ <p>
+ Jalview 2.11.1.0 is the first minor release for the 2.11 series.
+ We've moved to a <em>four</em> number scheme to help you (and us!)
+ keep track of patch and bug fix releases (which we used to denote
+ with a 'b').
+ </p>
+ <p>
+ See the <a href="releases.html#Jalview.2.11.1.0">2.11.1.0
+ release notes</a> for full details of bugs fixed and new known issues.
+ </p>
+ <p>
<strong>Jalview 2.11 - new installer and new capabilities</strong>
</p>
<p>Jalview 2.11 introduces support for loading VCF files, and new
we've addressed many bugs, and also made some important changes in
the way the Jalview desktop is installed and launched.</p>
<ul>
- <li><em>The Jalview Launcher and Update System</em><br />
+ <li><strong>The Jalview Launcher and Update System</strong>.
Jalview's new installation model means you'll only need to
download and install Jalview once. After installation, Jalview
will automatically keep itself up to date. The launcher also sets
href="https://en.wikipedia.org/wiki/Three_Rings_Design">Three
Rings Design</a> for Jalview's new over the air update system: <a
href="https://github.com/threerings/getdown">Getdown</a>.</li>
- <li><em>VCF Support</em>. Proteins and genomic contigs with
+ <li><strong>VCF Support</strong>. Proteins and genomic contigs with
chromosomal location annotation (such as protein coding genes
retrieved from Ensembl) can be annotated with variants <a
href="features/importvcf.html">imported from a local VCF file</a>.</li>
- <li><em>Feature filters and attribute colourschemes</em>. A new
+ <li><strong>Feature filters and attribute colourschemes</strong>. A new
<a href="features/featureschemes.html">Feature Display
Settings</a> dialog allows filters and feature attribute based
colourschemes to be constructed, and a new <em>filters</em> column
added to the <a href="features/featuresettings.html">Feature
Settings</a> dialog. Jalview's sequence feature datamodel has also
been further optimised, and is now maintained as a separate
- library <em><a
- href="https://github.com/bartongroup/IntervalStoreJ">IntervalStoreJ</a></em></li>
- <li><em>Alternative tables for CDS translation</em>. The <a
- href="menus/alwcalculate.html">Translate as CDNA</a> option now
+ library <em>IntervalStoreJ</em> (available at https://github.com/bartongroup/IntervalStoreJ)</li>
+ <li><strong>Alternative tables for CDS translation</strong>. The <a
+ href="menus/alwcalculate.html">Translate as cDNA</a> option now
offers alternative amino acid coding schemes.</li>
- <li><em>PCA plots stored in Jalview Projects</em><br />The <a
+ <li><strong>PCA plots stored in Jalview Projects</strong>. The <a
href="calculations/pca.html">PCA viewer</a> user interface has
also been improved.</li>
- <li><em>Backup files</em><br />Jalview will automatically
+ <li><strong>Backup files</strong>. Jalview will automatically
create backups when overwriting existing files, and - unlike with
- earlier versions, should Jalview crash during a save, the original
+ earlier versions - should Jalview crash during a save, the original
file will be unaffected. The <a
href="features/preferences.html#backups">Backups tab</a> in
Jalview's preferences dialog allows the number and format of
href="releases.html#Jalview.2.11.0">2.11 Release Notes</a>.
</p>
<p>
- <strong>Jalview and Java 11, 13, and onwards</strong>
+ <strong>Jalview and Java 11, and onwards</strong>
</p>
<p>The Jalview application comes bundled with its own independent
Java installation. Version 2.11.0 includes an AdoptOpenJDK Java 1.8
Jalview. Whilst Jalview 2.11 has been in development, we have also
been working with Prof. Bob Hanson (Jmol and JSmol) to enable
Jalview to run as both a Java application and a JavaScript app in a
- web page. To find out more, see the <a
- href="http://www.jalview.org/jalview-js/">JalviewJS web page</a>.
+ web page. To find out more, open <em>http://www.jalview.org/jalview-js/</em>
+ in Chrome or Firefox.
</p>
</body>
</html>
git://source.jalview.org / jalview.git / blobdiff