added description of alignment quality scores and separated

[jalview.git] / help / help.jhm

diff --git a/help/help.jhm b/help/help.jhm
index 231bcbc..5167e2c 100755 (executable)
--- a/help/help.jhm
+++ b/help/help.jhm
@@ -42,7 +42,12 @@
    <mapID target="colours.pid" url="html/colourSchemes/pid.html" />\r
    <mapID target="colours.user" url="html/colourSchemes/user.html"/>\r
    <mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>\r
-   <mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>\r
+   <mapID target="colours.conservation"\r
+   url="html/colourSchemes/conservation.html"/>\r
+\r
+   <mapID target="calcs.alquality"\r
+   url="html/calculations/quality.html"/>   \r
+   <mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>\r
    \r
    <mapID target="menus" url="html/menus/index.html"/>\r
    <mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>\r