<?xml version="1.0" encoding="ISO-8859-1" ?>
+<!--
+ Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+
+ This file is part of Jalview.
+
+ Jalview is free software: you can redistribute it and/or
+ modify it under the terms of the GNU General Public License
+ as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+
+ Jalview is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty
+ of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
<!DOCTYPE map PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN" "http://java.sun.com/products/javahelp/map_1_0.dtd">
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<mapID target="home" url="html/index.html" />
<mapID target="cursor" url="html/features/cursorMode.html"/>
<mapID target="search" url="html/features/search.html"/>
<mapID target="webservice" url="html/webServices/index.html"/>
+ <mapID target="jabaws" url="html/webServices/JABAWS.html"/>
+ <mapID target="wsparams" url="html/webServices/webServicesParams.html"/>
+ <mapID target="wsprefs" url="html/webServices/webServicesPrefs.html"/>
<mapID target="msaservice" url="html/webServices/msaclient.html"/>
- <mapID target="clustal" url="html/webServices/clustalw.html"/>
- <mapID target="muscle" url="html/webServices/muscle.html"/>
- <mapID target="mafft" url="html/webServices/mafft.html"/>
<mapID target="jnet" url="html/webServices/jnet.html"/>
+ <mapID target="shmrws" url="html/webServices/shmr.html"/>
+ <mapID target="newsreader" url="html/webServices/newsreader.html"/>
+ <mapID target="disorder" url="html/webServices/proteinDisorder.html"/>
+ <mapID target="aacon" url="html/webServices/AACon.html"/>
<mapID target="seqfetch" url="html/features/seqfetch.html"/>
+ <mapID target="dbreffetcher" url="html/webservices/dbreffetcher.html"/>
+ <mapID target="seqmappings" url="html/features/seqmappings.html"/>
+ <mapID target="cdnafeatures" url="html/features/codingfeatures.html"/>
<mapID target="seqfeatures" url="html/features/seqfeatures.html"/>
<mapID target="seqfeatedit" url="html/features/editingFeatures.html"/>
<mapID target="seqfeatcreat" url="html/features/creatinFeatures.html"/>
<mapID target="seqfeatures.settings" url="html/features/featuresettings.html"/>
<mapID target="viewingpdbs" url="html/features/viewingpdbs.html"/>
+ <mapID target="pdbmcviewer" url="html/features/pdbviewer.html"/>
+ <mapID target="pdbjmol" url="html/features/jmol.html"/>
+ <mapID target="varna" url="html/features/varna.html"/>
<mapID target="preferences" url="html/features/preferences.html"/>
+ <mapID target="commandline" url="html/features/commandline.html"/>
+ <mapID target="clarguments" url="html/features/clarguments.html"/>
<mapID target="io" url="html/io/index.html"/>
<mapID target="io.modellerpir" url="html/io/modellerpir.html"/>
+ <mapID target="io.seqreport" url="html/io/exportseqreport.html"/>
+ <mapID target="io.tcoffeescores" url="html/io/tcoffeescores.html"/>
<mapID target="export" url="html/io/export.html"/>
<mapID target="alformats" url="html/io/fileformats.html"/>
<mapID target="annotations.fileformat" url="html/features/annotationsFormat.html"/>
<mapID target="features.fileformat" url="html/features/featuresFormat.html"/>
+ <mapID target="features.featureschemes" url="html/features/featureschemes.html"/>
<mapID target="das.settings" url="html/features/dassettings.html"/>
<mapID target="das.viewing" url="html/features/dasfeatures.html"/>
<mapID target="edit" url="html/editing/index.html"/>
<mapID target="jalarchive" url="html/features/jalarchive.html"/>
<mapID target="multipleviews" url="html/features/multipleViews.html"/>
- <mapID target="reloadsave" url="html/features/reloadSave.html"/>
<mapID target="trees" url="html/calculations/tree.html"/>
+ <mapID target="treeviewer" url="html/calculations/treeviewer.html"/>
<mapID target="sorting" url="html/calculations/sorting.html"/>
<mapID target="pca" url="html/calculations/pca.html"/>
<mapID target="pairwise" url="html/calculations/pairwise.html"/>
<mapID target="colours.abovepid" url="html/colourSchemes/abovePID.html"/>
<mapID target="colours.conservation" url="html/colourSchemes/conservation.html"/>
<mapID target="colours.annotation" url="html/colourSchemes/annotationColouring.html"/>
+ <mapID target="colours.purinepyrimidine" url="html/colourSchemes/purinepyrimidine.html"/>
+ <mapID target="colours.rnahelices" url="html/colourSchemes/rnahelicesColouring.html"/>
<mapID target="calcs.alquality" url="html/calculations/quality.html"/>
<mapID target="calcs.alconserv" url="html/calculations/conservation.html"/>
+ <mapID target="calcs.alstrconsensus" url="html/calculations/structureconsensus.html"/>
<mapID target="calcs.consensus" url="html/calculations/consensus.html"/>
+ <mapID target="nucleicAcids" url="html/na/index.html"/>
+
<mapID target="menus" url="html/menus/index.html"/>
<mapID target="desktopMenu" url="html/menus/desktopMenu.html"/>
<mapID target="alMenu" url="html/menus/alignmentMenu.html"/>
<mapID target="memory" url="html/memory.html" />
<mapID target="jalviewjnlp" url="html/jalviewjnlp.html" />
-
+ <mapID target="groovy" url="html/features/groovy.html" />
+ <mapID target="privacy" url="html/privacy.html" />
+ <mapID target="vamsas" url="html/vamsas/index.html"/>
<mapID target="aminoAcids" url="html/misc/aminoAcids.html" />
<mapID target="aaProperties" url="html/misc/aaproperties.html" />
<mapID target="geneticCode" url="html/misc/geneticCode.html" />
+ <mapID target="subtMatrices" url="html/calculations/scorematrices.html" />
<mapID target="backIcon" url="icons/back.png" />
<mapID target="forwardIcon" url="icons/forward.png" />
git://source.jalview.org / jalview.git / blobdiff