PCA what's new and score matrix documentation page

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 75aa6d2..62bc222 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -29,6 +29,7 @@
                <tocitem text="Per-sequence Annotation Colouring" target="colours.annotation"/>
          <tocitem text="Sequence Database Retrieval Dialog" target="seqfetch"/>
          <tocitem text="JABAWS Web Service Preferences" target="wsprefs"/>
+         <tocitem text="DNA or Protein PCA calculation" target="pca"/>
        </tocitem>
     <tocitem text="Editing Alignments" target ="edit"/>        
     <tocitem text="Cursor Mode" target="cursor"/>
@@ -142,5 +143,7 @@
        <tocitem text="Amino Acid Table" target="aminoAcids"/>
        <tocitem text="Amino Acid Properties" target="aaProperties"/>
        <tocitem text="The Genetic Code" target="geneticCode"/>
+       <tocitem text="Sequence Substitution Matrices" target="subtMatrices"/>
+  
 </tocitem>
 </toc>