added description of alignment quality scores and separated

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 1530b05..8402add 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -9,8 +9,10 @@
                 <tocitem text="Sequence Feature Styles" target="seqfeatures"/>\r
         </tocitem>\r
        <tocitem text="Release History" target="release"/>\r
-       <tocitem text="Alignment Annotations" target ="alannotation"/>\r
-       \r
+       <tocitem text="Alignment Annotations" target ="alannotation" expand="false">\r
+          <tocitem text="Conservation" target="calcs.alconserv"/>\r
+          <tocitem text="Quality" target="calcs.alquality"/>\r
+        </tocitem>\r
        <tocitem text="Input / Output" target="io"/>\r
        <tocitem text="Key Strokes" target="keys"/>\r
        <tocitem text="Making figures" target="export"/>\r