<tocitem text="Jalview Documentation" target="home" expand="true" >
<tocitem text="What's new" target="new" expand="true">
<tocitem text="Jaba Web Services" target="jabaws"/>
- <tocitem text="Superpositions with Jmol 12" target="pdbjmol"/>
- <tocitem text="Web Service Parameters" target="wsparams"/>
- <tocitem text="Web Service Preferences" target="wsprefs"/>
- <tocitem text="Release History" target="release"/>
+ <tocitem text="Enhanced Jmol/Jalview interaction" target="pdbjmol"/>
+ <tocitem text="Sequence Harmony Multi-Relief Analysis" target="shmrws"/>
+ <tocitem text="Default Colouring preferences" target=""/>
</tocitem>
<tocitem text="Editing Alignments" target ="edit"/>
<tocitem text="Cursor Mode" target="cursor"/>
<tocitem text="JABAWS" target="jabaws"/>
<tocitem text="Web Service Preferences" target="wsprefs"/>
<tocitem text="Web Service Parameters" target="wsparams"/>
- <tocitem text="Sequence Alignment" target="msaservice" expand="false">
- <tocitem text="Clustal Alignment" target="clustal"/>
- <tocitem text="Muscle Alignment" target="muscle"/>
- <tocitem text="MAFFT Alignment" target="mafft"/>
+ <tocitem text="Sequence Alignment" target="msaservice" expand="false">
<tocitem text="Multiple Alignment Subjobs" target="msaservice"/>
</tocitem>
<tocitem text="Secondary Structure Prediction" target="jnet"/>
+ <tocitem text="Sequence Harmony Multi-Relief Analysis" target="shmrws"/>
<tocitem text="Sequence Retrieval" target="seqfetch"/>
<tocitem text="Database Reference Retrieval" target="dbreffetcher"/>
<tocitem text="DAS Feature Retrieval" target="das.viewing"/>