Merge branch 'patch/JAL-2197_jpredforjnets' into develop

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index a570a54..54abd53 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -23,9 +23,6 @@
 <!-- DO NOT WRAP THESE LINES - help2Website relies on each item being on one line! -->
        <tocitem text="Jalview Documentation" target="home" expand="true">
                        <tocitem text="What's new" target="new" expand="true">
-                               <tocitem text="Retrieval from ENSEMBL" target="ensemblfetch" />
-                               <tocitem text="UniProt Free Text Search" target="uniprotfetcher" />
-                               <tocitem text="SIFTS for mapping PDB structures to UniProt" target="siftsmapping" />
                                <tocitem text="Latest Release Notes" target="release"/>
                </tocitem>
                
@@ -73,7 +70,7 @@
                        <tocitem text="Sequence Alignment" target="msaservice"  expand="false">
                                <tocitem text="Multiple Alignment Subjobs" target="msaservice" />
                        </tocitem>
-                       <tocitem text="Secondary Structure Prediction" target="jnet" />
+                       <tocitem text="Secondary Structure Prediction" target="jpred" />
                        <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold" />
                        <tocitem text="Protein Disorder Prediction" target="disorder" />
                        <tocitem text="Alignment Conservation Analysis" target="aacon" />