<toc version="1.0">\r
<tocitem text="Jalview Documentation" target="home" expand="true" >\r
<tocitem text="What's new" target="new" expand="false">\r
- <tocitem text="MAFFT Alignment" target="mafft"/>\r
<tocitem text="DAS Feature Fetching" target="das.settings"/>\r
- <tocitem text="Hide Regions" target="hiddenRegions"/> \r
+ <tocitem text="Hide Regions" target="hiddenRegions"/>\r
+ <tocitem text="Tree/PCA Input Data" target="recoverInputdata"/>\r
+ <tocitem text="Multiple Alignment Subjobs" target="msaservice"/>\r
+ <tocitem text="MAFFT Alignment" target="mafft"/>\r
</tocitem>\r
<tocitem text="Release History" target="release"/>\r
<tocitem text="Editing Alignments" target ="edit"/> \r
<tocitem text="DAS Features Settings" target="das.viewing"/>\r
</tocitem>\r
<tocitem text="Web Services" target="webservice" expand="false">\r
+ <tocitem text="Sequence Alignment" target="msaservice" expand="false">\r
<tocitem text="Clustal Alignment" target="clustal"/>\r
<tocitem text="Muscle Alignment" target="muscle"/>\r
<tocitem text="MAFFT Alignment" target="mafft"/>\r
- <tocitem text="JNet Prediction" target="jnet"/>\r
+ </tocitem>\r
+ <tocitem text="Secondary Structure Prediction" target="jnet"/>\r
</tocitem>\r
<tocitem text="Colour Schemes" target="colours" expand="false">\r
<tocitem text="ClustalX" target="colours.clustal"/>\r