JAL-976 documentation for disorder, AACon, ClustalO services

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index f594bd9..75aa6d2 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -20,10 +20,15 @@
 <toc version="1.0">
 <tocitem text="Jalview Documentation" target="home" expand="true" >
        <tocitem text="What's new" target="new" expand="true">
+    <tocitem text="Protein Disorder Prediction" target="disorder"/>
+    <tocitem text="Alignment Conservation Analysis" target="aacon"/>
                <tocitem text="Viewing RNA structure" target="varna" />
                <tocitem text="RNA Structure Consensus" target="calcs.alstrconsensus"/>
                <tocitem text="RNA Helices coloring" target="colours.rnahelices"/>
                <tocitem text="HTML annotation report" target="io.seqreport"/>
+               <tocitem text="Per-sequence Annotation Colouring" target="colours.annotation"/>
+         <tocitem text="Sequence Database Retrieval Dialog" target="seqfetch"/>
+         <tocitem text="JABAWS Web Service Preferences" target="wsprefs"/>
        </tocitem>
     <tocitem text="Editing Alignments" target ="edit"/>        
     <tocitem text="Cursor Mode" target="cursor"/>
@@ -57,6 +62,8 @@
                 <tocitem text="Multiple Alignment Subjobs" target="msaservice"/>
             </tocitem>
           <tocitem text="Secondary Structure Prediction" target="jnet"/>
+          <tocitem text="Protein Disorder Prediction" target="disorder"/>
+          <tocitem text="Alignment Conservation Analysis" target="aacon"/>
           <tocitem text="Multi-Harmony Alignment Analysis" target="shmrws"/>
                <tocitem text="Sequence Retrieval" target="seqfetch"/>
                <tocitem text="Database Reference Retrieval" target="dbreffetcher"/>