apply gpl development license

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 1762e22..bd5a9d5 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,12 +1,30 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
+<!--
+   * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+   * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+   * 
+   * This program is free software; you can redistribute it and/or
+   * modify it under the terms of the GNU General Public License
+   * as published by the Free Software Foundation; either version 2
+   * of the License, or (at your option) any later version.
+   * 
+   * This program is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU General Public License for more details.
+   * 
+   * You should have received a copy of the GNU General Public License
+   * along with this program; if not, write to the Free Software
+   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+-->
 <!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
 <toc version="1.0">
 <tocitem text="Jalview Documentation" target="home" expand="true" >
        <tocitem text="What's new" target="new" expand="true">
       <tocitem text="Release History" target="release"/>
-         <tocitem text="PDB Viewing with Jmol" target="pdbjmol"/>
-         <tocitem text="Mapping between Sequences" target="seqmappings"/>
-    </tocitem>
+               <tocitem text="Sequence Retrieval" target="seqfetch"/>
+               <tocitem text="VAMSAS Interoperation" target="vamsas"/>
+       </tocitem>
     <tocitem text="Editing Alignments" target ="edit"/>        
     <tocitem text="Cursor Mode" target="cursor"/>
        <tocitem text="Key Strokes" target="keys"/>
@@ -71,6 +89,10 @@
          <tocitem text="Jmol Viewer" target="pdbjmol"/>
          <tocitem text="Simple PDB Viewer" target="pdbmcviewer"/>
        </tocitem>
+       <tocitem text="VAMSAS Data Exchange" target="vamsas">
+               <!-- what can Jalview share with other apps -->
+               <!-- what other apps exist -->
+               </tocitem>
        <tocitem text="Window Menus" target="menus" expand="false">
                <tocitem text="Desktop Window" target="desktopMenu"/>
                <tocitem text="Alignment Window" target="alMenu">