JAL-2284 documentation for the new command-line option

[jalview.git] / help / helpTOC.xml

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index c4476fd..bf1710c 100755 (executable)
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -25,7 +25,7 @@
                        <tocitem text="What's new" target="new" expand="true">
                                <tocitem text="Retrieval from ENSEMBL" target="ensemblfetch" />
                                <tocitem text="UniProt Free Text Search" target="uniprotfetcher" />
-                               
+                               <tocitem text="SIFTS for mapping PDB structures to UniProt" target="siftsmapping" />
                                <tocitem text="Latest Release Notes" target="release"/>
                </tocitem>
                
@@ -156,9 +156,11 @@
                </tocitem>
                <tocitem text="Preferences" target="preferences" />
                <tocitem text="Memory Settings" target="memory" expand="false"/>
+               <tocitem text="Scripting with Groovy" target="groovy">
+                       <tocitem text="Groovy Feature Counter example" target="groovy.featurecounter"/>
+               </tocitem>
                <tocitem text="Command Line" target="commandline" expand="false">
                        <tocitem text="Command Line Arguments" target="clarguments" />
-                       <tocitem text="Groovy Shell" target="groovy" />
                </tocitem>
                <tocitem text="Privacy" target="privacy" />
        </tocitem>