-<html>\r
-<head><title>Alignment Conservation Annotation</title></head>\r
-<body><p><strong>Alignment Conservation Annotation</strong></p>\r
-<p>This is an automatically calculated quantitative alignment\r
-annotation which measures the number of conserved physico-chemical\r
-properties conserved for each column of the alignment. Its calculation\r
-is based on the one used in\r
- the AMAS method of multiple sequence alignment analysis :<br>\r
-<ul>Livingstone\r
- C.D. and Barton G.J. (1993), Protein Sequence Alignments: A Strategy \r
- for the Hierarchical Analysis of Residue Conservation.<em>CABIOS</em> Vol. <b>9</b>\r
- No. 6 (745-756)).\r
-</ul>\r
-</p>\r
-<p>Conservation is measured as a numerical index reflecting the conservation of \r
- <a href="../misc/aaproperties.html">physico-chemical \r
- properties</a> in the alignment: Identities score highest, and the next most \r
- conserved group contain substitutions to amino acids lying in the same physico-chemical \r
- class.</p>\r
-\r
-<p><em>Colouring an alignment by conservation</em><br>\r
-Conservation scores can be used to colour an alignment. This is\r
-explained further in the help page for <a\r
-href="../colourSchemes/conservation.html">conservation colouring</a>.\r
-</p>\r
-</body>\r
-</html>\r
+<html>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+-->
+<head><title>Alignment Conservation Annotation</title></head>
+<body><p><strong>Alignment Conservation Annotation</strong></p>
+<p>This is an automatically calculated quantitative alignment
+annotation which measures the number of conserved physico-chemical
+properties conserved for each column of the alignment. Its calculation
+is based on the one used in
+ the AMAS method of multiple sequence alignment analysis :<br>
+<ul>Livingstone
+ C.D. and Barton G.J. (1993), Protein Sequence Alignments: A Strategy
+ for the Hierarchical Analysis of Residue Conservation.<em>CABIOS</em> Vol. <b>9</b>
+ No. 6 (745-756)).
+</ul>
+</p>
+<p>Conservation is measured as a numerical index reflecting the conservation of
+ <a href="../misc/aaproperties.html">physico-chemical
+ properties</a> in the alignment: Identities score highest, and the next most
+ conserved group contain substitutions to amino acids lying in the same physico-chemical
+ class.</p>
+
+<p><em>Colouring an alignment by conservation</em><br>
+Conservation scores can be used to colour an alignment. This is
+explained further in the help page for <a
+href="../colourSchemes/conservation.html">conservation colouring</a>.
+</p>
+</body>
+</html>
git://source.jalview.org / jalview.git / blobdiff