JAL-1557 selection from annotation (and group annotation) added to help

[jalview.git] / help / html / features / annotation.html

diff --git a/help/html/features/annotation.html b/help/html/features/annotation.html
index a645630..7e52c46 100755 (executable)
--- a/help/html/features/annotation.html
+++ b/help/html/features/annotation.html
@@ -48,6 +48,25 @@ alignment window or loaded from the alignment's file menu.
                        href="../webServices/proteinDisorder.html">disordered region</a>
                prediction methods. 
 </p>
+<p><strong>Sequence Group Annotation</strong>
+</p>
+<p>
+       If sequence groups are defined, <a href="../calculations/conservation.html">Conservation</a>
+        and <a href="../calculations/consensus.html">Consensus</a> annotation can be enabled
+       for each group from the <a href="../menus/alwannotation.html">Annotations menu</a>, or can
+       be imported from a Jalview <a href="annotationsFormat.html">Annotations file</a>.
+</p>
+<p><strong>Sequence Selection from Annotation</strong>
+</p>
+<p>
+    Sequences associated with sequence (or sequence group) annotations can be selected by
+    double-clicking the annotation label with these key combinations:
+    <ul>
+    <li>double-click - Select associated sequences (replaces current selection)</li>
+    <li>shift double-click - add  sequences to selection</li>
+    <li>Ctrl (Mac CMD) double-click - toggles inclusion of associated sequences in the current selection</li>
+    </ul>
+    Note this also works in combination with manual sequence selection in the alignment.
 <p><strong>Interactive Alignment Annotation</strong></p>
 <p>
 Annotation rows are added using the <strong>Annotation Label</strong>