Merge branch 'releases/Release_2_10_4_Branch'

[jalview.git] / help / html / features / chimera.html

diff --git a/help/html/features/chimera.html b/help/html/features/chimera.html
index 89a29c9..e1227de 100644 (file)
--- a/help/html/features/chimera.html
+++ b/help/html/features/chimera.html
@@ -211,36 +211,32 @@
             structure in the alignment. The regions used to calculate
             the superposition will be highlighted using the 'Cartoon'
             rendering style, and the remaining data shown as a chain
-            trace.<br/><br/>
+            trace.<br />
+          <br />
         </em></li>
-        <li><strong><a name="experimental">EXPERIMENTAL FEATURES</a></strong><br/>
-          <em>
-            These are only available if the <strong>Tools&#8594;Enable
-            Experimental Features</strong> option is enabled. (Since Jalview 2.10.2)</em>
-          <ul>
-            <li><strong>Write Jalview features</strong><br />
-              <em>Selecting this option will create new residue attributes
-              for any features currently visible in the associated
-              alignment views, allowing those positions to be selected
-              and analysed with via Chimera's 'Render by Attribute' tool
-              (found in the Tools submenu called Structure Analysis).<br />
-            <br />If you use this option, please remember to select the
-              <em>Refresh Menus</em> option in Chimera's Render by
-              Attribute dialog box in order to see the attributes
-              derived from Jalview sequence features.</em></li>
-            <li><strong>Fetch Chimera Attributes</strong><br />
-              <em>This submenu lists available Chimera residue attributes
-              that can be imported as Jalview features on associated
-              sequences.<br />This is particularly useful for
-              transferring quantitative positional annotation. For
-              example, structure similarity for an alignment can be
-              visualised by transferring the local RMSD attributes
-              generated by Chimera's Match->Align tool onto aligned
-              sequences and displayed with a <a
-              href="featureschemes.html">Graduated feature colour
-                scheme</a>.</em></li>
-          </ul></li>
-        <li><strong>Help<br>
+        <li><a name="annotxfer"><strong>Write Jalview
+              features</strong></a><br /> <em>Selecting this option will create
+            new residue attributes for any features currently visible in
+            the associated alignment views, allowing those positions to
+            be selected and analysed with via Chimera's 'Render by
+            Attribute' tool (found in the Tools submenu called Structure
+            Analysis).<br /> <br />If you use this option, please
+            remember to select the <em>Refresh Menus</em> option in
+            Chimera's Render by Attribute dialog box in order to see the
+            attributes derived from Jalview sequence features.
+        </em></li>
+        <li><strong>Fetch Chimera Attributes</strong><br /> <em>This
+            submenu lists available Chimera residue attributes that can
+            be imported as Jalview features on associated sequences.<br />This
+            is particularly useful for transferring quantitative
+            positional annotation. For example, structure similarity for
+            an alignment can be visualised by transferring the local
+            RMSD attributes generated by Chimera's Match->Align tool
+            onto aligned sequences and displayed with a <a
+            href="featureschemes.html">Graduated feature colour
+              scheme</a>. </li>
+      </ul></li>
+    <li><strong>Help<br>
     </strong>
       <ul>
         <li><strong>Chimera Help<br>