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Jalview 2.6 source licence
[jalview.git] / help / html / features / clarguments.html
diff --git a/help/html/features/clarguments.html b/help/html/features/clarguments.html
index 9bca344..c8a594a 100644 (file)
--- a/help/html/features/clarguments.html
+++ b/help/html/features/clarguments.html
@@ -1,6 +1,6 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
@@ -41,7 +41,17 @@
  See <a href="featuresFormat.html" target="NEW">Features 
  File</a> (Known as Groups file prior to 2.08) description. </p>
 
- </div></td>
+               </div>
+               </td>
+       </tr>
+       <tr>
+               <td>
+               <div align="center">-colour COLOURSCHEME</div>
+               </td>
+               <td>Set the colourscheme for the alignment. This can be any of
+               the built-in colourschemes, a name of a predefined colourscheme
+               (defined in the jalview properties file), or an 'inline' colourscheme
+               (see the applet's colour parameter for more information).</td>
  </tr>
        <tr>
                <td>